miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26031 5' -58.2 NC_005342.2 + 27055 0.66 0.49307
Target:  5'- cCUGC--GCGCcaaGUagCAcGCGCUGCGCCg -3'
miRNA:   3'- -GACGacUGCGa--CAa-GU-CGCGGCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 30769 0.66 0.482872
Target:  5'- cCUGCUGAa--UGUUCA-CGCCgaacgacgcgaGCGCCu -3'
miRNA:   3'- -GACGACUgcgACAAGUcGCGG-----------CGCGG- -5'
26031 5' -58.2 NC_005342.2 + 27587 0.66 0.482872
Target:  5'- aUGCccGACGUcGaaUAGCGCgGCGCCu -3'
miRNA:   3'- gACGa-CUGCGaCaaGUCGCGgCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 1093 0.66 0.482872
Target:  5'- -cGC--GCGCgaagUCGGUGCCGUGCUg -3'
miRNA:   3'- gaCGacUGCGaca-AGUCGCGGCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 22182 0.66 0.482872
Target:  5'- -aGCcGGCgGCgGUUCGGCGgCUGCgGCCu -3'
miRNA:   3'- gaCGaCUG-CGaCAAGUCGC-GGCG-CGG- -5'
26031 5' -58.2 NC_005342.2 + 28320 0.66 0.481858
Target:  5'- gCUGUUGACgGCcagcgUCGGCcgcgcucGCCGCGCUc -3'
miRNA:   3'- -GACGACUG-CGaca--AGUCG-------CGGCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 24897 0.66 0.480845
Target:  5'- -aGUUGAUGCUGUccaucacggucaCGGuCGUCGUGCCc -3'
miRNA:   3'- gaCGACUGCGACAa-----------GUC-GCGGCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 17120 0.67 0.472778
Target:  5'- -gGCUcGCGCgcgagCAGCaGCuCGCGCCg -3'
miRNA:   3'- gaCGAcUGCGacaa-GUCG-CG-GCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 27507 0.67 0.462791
Target:  5'- -gGUUGAUGUaagcgaucgacgUGUcgaUCgcaAGUGCCGCGCCg -3'
miRNA:   3'- gaCGACUGCG------------ACA---AG---UCGCGGCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 20595 0.67 0.462791
Target:  5'- uCUGCaGGCGCgGcUCGGCcUCGCGCa -3'
miRNA:   3'- -GACGaCUGCGaCaAGUCGcGGCGCGg -5'
26031 5' -58.2 NC_005342.2 + 38896 0.67 0.462791
Target:  5'- gUGCUGcgcGCGCUGcaccggCAGCacgcCCGCGCa -3'
miRNA:   3'- gACGAC---UGCGACaa----GUCGc---GGCGCGg -5'
26031 5' -58.2 NC_005342.2 + 1309 0.67 0.462791
Target:  5'- gCUGCgcgcGAUGCUucgCGGCGCuCGCGgCg -3'
miRNA:   3'- -GACGa---CUGCGAcaaGUCGCG-GCGCgG- -5'
26031 5' -58.2 NC_005342.2 + 20390 0.67 0.452915
Target:  5'- -gGCcGugGCcg--CAGUgGCCGCGCCg -3'
miRNA:   3'- gaCGaCugCGacaaGUCG-CGGCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 44815 0.67 0.450954
Target:  5'- aCUGCgaggcgauacucGACGcCUGUcugcgCGGCGaUCGCGCCu -3'
miRNA:   3'- -GACGa-----------CUGC-GACAa----GUCGC-GGCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 38399 0.67 0.442186
Target:  5'- -gGCUGGCGCUgaagGUggcggcaacgaacUCgccacgauuGGUGCCGCGCUg -3'
miRNA:   3'- gaCGACUGCGA----CA-------------AG---------UCGCGGCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 4859 0.67 0.423999
Target:  5'- -cGCUGaccauguagcgcGCGCUGcgauaguGCGCCGuCGCCa -3'
miRNA:   3'- gaCGAC------------UGCGACaagu---CGCGGC-GCGG- -5'
26031 5' -58.2 NC_005342.2 + 20634 0.67 0.423999
Target:  5'- ----cGACGCgagcGUcgcaaCGGCGCUGCGCCa -3'
miRNA:   3'- gacgaCUGCGa---CAa----GUCGCGGCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 9542 0.67 0.423055
Target:  5'- -cGCcGGCgGCUGcgggaauUUCAGCGCgGCgGCCa -3'
miRNA:   3'- gaCGaCUG-CGAC-------AAGUCGCGgCG-CGG- -5'
26031 5' -58.2 NC_005342.2 + 45569 0.68 0.414608
Target:  5'- -cGUUGcCGCUGUaCGGCGaCCaggcgaccgccgGCGCCg -3'
miRNA:   3'- gaCGACuGCGACAaGUCGC-GG------------CGCGG- -5'
26031 5' -58.2 NC_005342.2 + 14628 0.68 0.414608
Target:  5'- -cGCUGAUGUUG--CGGCGCauuuCGCGCa -3'
miRNA:   3'- gaCGACUGCGACaaGUCGCG----GCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.