miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26032 3' -52.4 NC_005342.2 + 20974 0.73 0.405686
Target:  5'- gCGgcGCGGgcgAGUGGgUGCGUuuCGAGCg -3'
miRNA:   3'- -GCuuCGCU---UCACCgACGCGuuGCUUG- -5'
26032 3' -52.4 NC_005342.2 + 19599 0.73 0.396167
Target:  5'- aCGAcGCGAacaaGGUcacGGCgaGCGCGGCGAGCg -3'
miRNA:   3'- -GCUuCGCU----UCA---CCGa-CGCGUUGCUUG- -5'
26032 3' -52.4 NC_005342.2 + 41795 0.74 0.377565
Target:  5'- aCGAggauAGCGucGU-GCUGCGCGACGAGg -3'
miRNA:   3'- -GCU----UCGCuuCAcCGACGCGUUGCUUg -5'
26032 3' -52.4 NC_005342.2 + 13860 0.74 0.368488
Target:  5'- ---cGCGAAGUcggccggcacgGGCUGCGCGGCGGc- -3'
miRNA:   3'- gcuuCGCUUCA-----------CCGACGCGUUGCUug -5'
26032 3' -52.4 NC_005342.2 + 9357 0.76 0.271522
Target:  5'- gCGAAGCGgcGcGGgUGCGCgGACGGGCg -3'
miRNA:   3'- -GCUUCGCuuCaCCgACGCG-UUGCUUG- -5'
26032 3' -52.4 NC_005342.2 + 3950 0.8 0.152248
Target:  5'- aGAAGuCGAAG-GGCgcguugUGCGCGACGAACa -3'
miRNA:   3'- gCUUC-GCUUCaCCG------ACGCGUUGCUUG- -5'
26032 3' -52.4 NC_005342.2 + 42515 1.11 0.001086
Target:  5'- cCGAAGCGAAGUGGCUGCGCAACGAACa -3'
miRNA:   3'- -GCUUCGCUUCACCGACGCGUUGCUUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.