miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26032 5' -54.6 NC_005342.2 + 1052 0.66 0.709669
Target:  5'- cGCGUUccaaguccucCGUAGucaUCGGCGcACGCUGCg -3'
miRNA:   3'- -CGCAA----------GCGUCuacGGCUGC-UGCGACG- -5'
26032 5' -54.6 NC_005342.2 + 29714 0.66 0.709669
Target:  5'- uGCGgauUCaGCAGcGUGCCGuCGGCGUcGUa -3'
miRNA:   3'- -CGCa--AG-CGUC-UACGGCuGCUGCGaCG- -5'
26032 5' -54.6 NC_005342.2 + 18320 0.66 0.709669
Target:  5'- gGCGcaCGgcaaAGcgGCCGAgGACGCcGCg -3'
miRNA:   3'- -CGCaaGCg---UCuaCGGCUgCUGCGaCG- -5'
26032 5' -54.6 NC_005342.2 + 34867 0.67 0.69882
Target:  5'- cGCaGcUCGC-GAUGCCGuacauCGACaacugGCUGCg -3'
miRNA:   3'- -CG-CaAGCGuCUACGGCu----GCUG-----CGACG- -5'
26032 5' -54.6 NC_005342.2 + 32689 0.67 0.69882
Target:  5'- aGCGcccggUGCuGAUGCUGACcGCGCcGCc -3'
miRNA:   3'- -CGCaa---GCGuCUACGGCUGcUGCGaCG- -5'
26032 5' -54.6 NC_005342.2 + 2847 0.67 0.687906
Target:  5'- -gGUcUGCGGccuUGCCGACcuGGCGCUGg -3'
miRNA:   3'- cgCAaGCGUCu--ACGGCUG--CUGCGACg -5'
26032 5' -54.6 NC_005342.2 + 23891 0.67 0.676937
Target:  5'- cCGUUCaucguGCGGAaGCCGAaCGGCGCg-- -3'
miRNA:   3'- cGCAAG-----CGUCUaCGGCU-GCUGCGacg -5'
26032 5' -54.6 NC_005342.2 + 10174 0.67 0.676937
Target:  5'- cGCGcacgCGCAuGcgGCCGuCGGCaucaaaGCUGCg -3'
miRNA:   3'- -CGCaa--GCGU-CuaCGGCuGCUG------CGACG- -5'
26032 5' -54.6 NC_005342.2 + 45295 0.67 0.676937
Target:  5'- uCGgcCGCc---GCCGgcGCGACGCUGCa -3'
miRNA:   3'- cGCaaGCGucuaCGGC--UGCUGCGACG- -5'
26032 5' -54.6 NC_005342.2 + 30348 0.67 0.665925
Target:  5'- aGCag-CGCGGcaagGCgCGGCGuGCGCUGCu -3'
miRNA:   3'- -CGcaaGCGUCua--CG-GCUGC-UGCGACG- -5'
26032 5' -54.6 NC_005342.2 + 22326 0.67 0.665925
Target:  5'- gGCGUggcacaacuUCGCcacgaGGAaGCCGACGAaacCUGCg -3'
miRNA:   3'- -CGCA---------AGCG-----UCUaCGGCUGCUgc-GACG- -5'
26032 5' -54.6 NC_005342.2 + 15777 0.67 0.654881
Target:  5'- aGCGUUCGaucgcGCCGACG-C-CUGCg -3'
miRNA:   3'- -CGCAAGCgucuaCGGCUGCuGcGACG- -5'
26032 5' -54.6 NC_005342.2 + 11198 0.67 0.654881
Target:  5'- uCGggCGCGGcuccuUGCCGGCGcucgagUGCUGCc -3'
miRNA:   3'- cGCaaGCGUCu----ACGGCUGCu-----GCGACG- -5'
26032 5' -54.6 NC_005342.2 + 19618 0.67 0.654881
Target:  5'- gGCGagCGCGGcgaGCgCGGcCGACGCUGg -3'
miRNA:   3'- -CGCaaGCGUCua-CG-GCU-GCUGCGACg -5'
26032 5' -54.6 NC_005342.2 + 46334 0.67 0.654881
Target:  5'- cGCGcagCGCAuucagggcuacGccGCCGACGACGCUu- -3'
miRNA:   3'- -CGCaa-GCGU-----------CuaCGGCUGCUGCGAcg -5'
26032 5' -54.6 NC_005342.2 + 1972 0.67 0.654881
Target:  5'- aGCGUcacgcccgCGCGGAugaUGCCGACGucACgGCcGCg -3'
miRNA:   3'- -CGCAa-------GCGUCU---ACGGCUGC--UG-CGaCG- -5'
26032 5' -54.6 NC_005342.2 + 25201 0.67 0.654881
Target:  5'- cGCGacucgaCGUcGAcGCCcGCGACGCUGCc -3'
miRNA:   3'- -CGCaa----GCGuCUaCGGcUGCUGCGACG- -5'
26032 5' -54.6 NC_005342.2 + 34088 0.67 0.654881
Target:  5'- cGCcg-CGCAGcccGUGCCGgccgacuucgcGCGGCGCgGCg -3'
miRNA:   3'- -CGcaaGCGUC---UACGGC-----------UGCUGCGaCG- -5'
26032 5' -54.6 NC_005342.2 + 30979 0.67 0.653776
Target:  5'- gGUGUUCGuCAGugcaagcaccAUGCCGGCGAgaccggcCGCaccUGCg -3'
miRNA:   3'- -CGCAAGC-GUC----------UACGGCUGCU-------GCG---ACG- -5'
26032 5' -54.6 NC_005342.2 + 45124 0.67 0.643817
Target:  5'- uCGUUCGCAaacGCCG-CGACauugaucgaaGCUGCg -3'
miRNA:   3'- cGCAAGCGUcuaCGGCuGCUG----------CGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.