Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26033 | 3' | -55.3 | NC_005342.2 | + | 42402 | 1.07 | 0.000982 |
Target: 5'- gCCCGAUGGCCGCACAAUCGAGCUGAAc -3' miRNA: 3'- -GGGCUACCGGCGUGUUAGCUCGACUU- -5' |
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26033 | 3' | -55.3 | NC_005342.2 | + | 17744 | 0.78 | 0.13458 |
Target: 5'- gCCUGGUcGGCCGCACGcUCGGGCUcGAc -3' miRNA: 3'- -GGGCUA-CCGGCGUGUuAGCUCGA-CUu -5' |
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26033 | 3' | -55.3 | NC_005342.2 | + | 13943 | 0.75 | 0.209608 |
Target: 5'- gCCGgcGGCCgGUGCGcgCGAGCUGAGu -3' miRNA: 3'- gGGCuaCCGG-CGUGUuaGCUCGACUU- -5' |
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26033 | 3' | -55.3 | NC_005342.2 | + | 36176 | 0.74 | 0.232696 |
Target: 5'- gCUGAUGGCCGCGucguacuugcgcuCAAUCGAGCg--- -3' miRNA: 3'- gGGCUACCGGCGU-------------GUUAGCUCGacuu -5' |
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26033 | 3' | -55.3 | NC_005342.2 | + | 3599 | 0.73 | 0.266076 |
Target: 5'- gCCUGcgGGCCGUAgCAGUCGAcCUGAu -3' miRNA: 3'- -GGGCuaCCGGCGU-GUUAGCUcGACUu -5' |
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26033 | 3' | -55.3 | NC_005342.2 | + | 6830 | 0.71 | 0.354457 |
Target: 5'- aCCGgcGGCUGCGCAcugcauugcgcagccAUCGAGCgGAu -3' miRNA: 3'- gGGCuaCCGGCGUGU---------------UAGCUCGaCUu -5' |
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26033 | 3' | -55.3 | NC_005342.2 | + | 18895 | 0.71 | 0.377309 |
Target: 5'- aUCGAaGGCCGCcuguuugugGCGAUCGAGCUa-- -3' miRNA: 3'- gGGCUaCCGGCG---------UGUUAGCUCGAcuu -5' |
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26033 | 3' | -55.3 | NC_005342.2 | + | 24936 | 0.7 | 0.423955 |
Target: 5'- gCCCGGagaaGCCGCgccGCAGUCGAGCUucGAGu -3' miRNA: 3'- -GGGCUac--CGGCG---UGUUAGCUCGA--CUU- -5' |
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26033 | 3' | -55.3 | NC_005342.2 | + | 44881 | 0.7 | 0.423955 |
Target: 5'- gCCCGAuacUGGCCGCGCuu----GCUGAu -3' miRNA: 3'- -GGGCU---ACCGGCGUGuuagcuCGACUu -5' |
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26033 | 3' | -55.3 | NC_005342.2 | + | 44603 | 0.7 | 0.433691 |
Target: 5'- gCCCGAcucGCUGCGCcagcuGAUCGAGCUGc- -3' miRNA: 3'- -GGGCUac-CGGCGUG-----UUAGCUCGACuu -5' |
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26033 | 3' | -55.3 | NC_005342.2 | + | 41337 | 0.7 | 0.433691 |
Target: 5'- gCCGAgcgcgcuGCCgaGCGCGAUCGAGUUGAu -3' miRNA: 3'- gGGCUac-----CGG--CGUGUUAGCUCGACUu -5' |
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26033 | 3' | -55.3 | NC_005342.2 | + | 40142 | 0.69 | 0.443555 |
Target: 5'- gCCGGcgcaGGCCGCgucgaucugGCGAgCGAGCUGAAc -3' miRNA: 3'- gGGCUa---CCGGCG---------UGUUaGCUCGACUU- -5' |
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26033 | 3' | -55.3 | NC_005342.2 | + | 8991 | 0.69 | 0.452541 |
Target: 5'- gCCUGccGGCCGCucgggguGCGGUCGAGCa--- -3' miRNA: 3'- -GGGCuaCCGGCG-------UGUUAGCUCGacuu -5' |
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26033 | 3' | -55.3 | NC_005342.2 | + | 42308 | 0.69 | 0.473883 |
Target: 5'- cCCUGcacAUGGCCGCA--GUCGAGUcGAAg -3' miRNA: 3'- -GGGC---UACCGGCGUguUAGCUCGaCUU- -5' |
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26033 | 3' | -55.3 | NC_005342.2 | + | 45638 | 0.68 | 0.515859 |
Target: 5'- gCCGAgcUGGCCGCguugcgcgagaaGCAgcucGUCGAGCgGAu -3' miRNA: 3'- gGGCU--ACCGGCG------------UGU----UAGCUCGaCUu -5' |
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26033 | 3' | -55.3 | NC_005342.2 | + | 19513 | 0.68 | 0.526592 |
Target: 5'- gCUCG-UGGCCGUauggGCAAUCGuucgcaAGCUGAu -3' miRNA: 3'- -GGGCuACCGGCG----UGUUAGC------UCGACUu -5' |
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26033 | 3' | -55.3 | NC_005342.2 | + | 14946 | 0.68 | 0.537407 |
Target: 5'- gCUCGAUgcGGCCGaCGCAacgcGUCGcucGGCUGAAc -3' miRNA: 3'- -GGGCUA--CCGGC-GUGU----UAGC---UCGACUU- -5' |
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26033 | 3' | -55.3 | NC_005342.2 | + | 19255 | 0.67 | 0.569171 |
Target: 5'- aUCCGgcGGCCGCGCAGcugauugccgcguUCGAccGCgUGAAc -3' miRNA: 3'- -GGGCuaCCGGCGUGUU-------------AGCU--CG-ACUU- -5' |
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26033 | 3' | -55.3 | NC_005342.2 | + | 41112 | 0.67 | 0.570276 |
Target: 5'- gCUCGAUGGCUGCGCAAUgcaGuGCg--- -3' miRNA: 3'- -GGGCUACCGGCGUGUUAg--CuCGacuu -5' |
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26033 | 3' | -55.3 | NC_005342.2 | + | 36908 | 0.67 | 0.581348 |
Target: 5'- uCCCGGaaugGGCCGCACGccggcgGUCGAGa---- -3' miRNA: 3'- -GGGCUa---CCGGCGUGU------UAGCUCgacuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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