miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26033 5' -62.5 NC_005342.2 + 35593 0.66 0.30861
Target:  5'- cACUggCGCGCCGGGCgGggCGCgGGCgGg -3'
miRNA:   3'- -UGA--GCGCGGUUCGgCa-GCGgCCGgUg -5'
26033 5' -62.5 NC_005342.2 + 2805 0.66 0.30861
Target:  5'- uGCUCGCGaaugcGCCGUCGgC-GCCGCc -3'
miRNA:   3'- -UGAGCGCgguu-CGGCAGCgGcCGGUG- -5'
26033 5' -62.5 NC_005342.2 + 22839 0.66 0.301283
Target:  5'- aACgugCGCGCC--GCCGugcUCGCCGuGCC-Cg -3'
miRNA:   3'- -UGa--GCGCGGuuCGGC---AGCGGC-CGGuG- -5'
26033 5' -62.5 NC_005342.2 + 37852 0.66 0.301283
Target:  5'- cUUCGCGUuCGAcGCCGaC-CCGGCCGCc -3'
miRNA:   3'- uGAGCGCG-GUU-CGGCaGcGGCCGGUG- -5'
26033 5' -62.5 NC_005342.2 + 31866 0.66 0.294091
Target:  5'- --aCGCGgCGA-CUGUCggcagGCCGGCCACg -3'
miRNA:   3'- ugaGCGCgGUUcGGCAG-----CGGCCGGUG- -5'
26033 5' -62.5 NC_005342.2 + 14216 0.66 0.294091
Target:  5'- uGCgcgCGCGCCucuuucGAGCCGagCGgCGGCaCGCc -3'
miRNA:   3'- -UGa--GCGCGG------UUCGGCa-GCgGCCG-GUG- -5'
26033 5' -62.5 NC_005342.2 + 8603 0.66 0.294091
Target:  5'- gUUCGCGUCcGGCagcaGUCGGCCGCu -3'
miRNA:   3'- uGAGCGCGGuUCGgcagCGGCCGGUG- -5'
26033 5' -62.5 NC_005342.2 + 39752 0.66 0.294091
Target:  5'- cCUCGCG-CGGGCCGgCGUCauccuGCCACg -3'
miRNA:   3'- uGAGCGCgGUUCGGCaGCGGc----CGGUG- -5'
26033 5' -62.5 NC_005342.2 + 9832 0.66 0.294091
Target:  5'- uCUCGauCGCCGucuugaccguGGCCGgcgucaCGCCGGCgCACc -3'
miRNA:   3'- uGAGC--GCGGU----------UCGGCa-----GCGGCCG-GUG- -5'
26033 5' -62.5 NC_005342.2 + 29675 0.67 0.287033
Target:  5'- aGCgCGUGCCGAGCgCGgccgCGCU-GCCGCc -3'
miRNA:   3'- -UGaGCGCGGUUCG-GCa---GCGGcCGGUG- -5'
26033 5' -62.5 NC_005342.2 + 19490 0.67 0.287033
Target:  5'- cGCg-GCGCuCGGGCaGUUGCUGGCCGa -3'
miRNA:   3'- -UGagCGCG-GUUCGgCAGCGGCCGGUg -5'
26033 5' -62.5 NC_005342.2 + 17829 0.67 0.287033
Target:  5'- uACggCGCGCgAauucGGuCCGgCGCCGGUCGCu -3'
miRNA:   3'- -UGa-GCGCGgU----UC-GGCaGCGGCCGGUG- -5'
26033 5' -62.5 NC_005342.2 + 20526 0.67 0.280109
Target:  5'- -aUgGCGCCuggucgacAGCCGUCGCCGcGCa-- -3'
miRNA:   3'- ugAgCGCGGu-------UCGGCAGCGGC-CGgug -5'
26033 5' -62.5 NC_005342.2 + 26661 0.67 0.280109
Target:  5'- -aUCGCGCCGgcuGCCGauagCGUCaGGUCGCc -3'
miRNA:   3'- ugAGCGCGGUu--CGGCa---GCGG-CCGGUG- -5'
26033 5' -62.5 NC_005342.2 + 21167 0.67 0.280109
Target:  5'- cUUCGCGCU--GCCGcagGCCGGCCuGCu -3'
miRNA:   3'- uGAGCGCGGuuCGGCag-CGGCCGG-UG- -5'
26033 5' -62.5 NC_005342.2 + 47220 0.67 0.27874
Target:  5'- --aCGCGCCGGcggcgacuGCCGcgcugaacgaggCGCCGGCCGg -3'
miRNA:   3'- ugaGCGCGGUU--------CGGCa-----------GCGGCCGGUg -5'
26033 5' -62.5 NC_005342.2 + 4413 0.67 0.273318
Target:  5'- --cCGCGUu--GuuGUCuGCCGGCCACu -3'
miRNA:   3'- ugaGCGCGguuCggCAG-CGGCCGGUG- -5'
26033 5' -62.5 NC_005342.2 + 2270 0.67 0.266661
Target:  5'- -gUCGUGC---GCCGUgGCCGGCaCGCc -3'
miRNA:   3'- ugAGCGCGguuCGGCAgCGGCCG-GUG- -5'
26033 5' -62.5 NC_005342.2 + 31026 0.67 0.266661
Target:  5'- cGC-CGaCGCCGAGCaCGgcgcccgcaaUGCCGGCCAg -3'
miRNA:   3'- -UGaGC-GCGGUUCG-GCa---------GCGGCCGGUg -5'
26033 5' -62.5 NC_005342.2 + 18387 0.67 0.266661
Target:  5'- cGCgCGCGCUucGCCGcgaaugaccagUCGaCCGGCgGCg -3'
miRNA:   3'- -UGaGCGCGGuuCGGC-----------AGC-GGCCGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.