miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26035 3' -52.3 NC_005342.2 + 17399 0.66 0.82268
Target:  5'- aGGCGCucgacgCGUucua-CGaCGCGGUGUc -3'
miRNA:   3'- gCCGCGua----GCAuuuuaGC-GCGCCACG- -5'
26035 3' -52.3 NC_005342.2 + 32217 0.66 0.82174
Target:  5'- gCGGCGaaauuUCGUugacccgGAAgcguuugccgacGUCGCGCGGcGCg -3'
miRNA:   3'- -GCCGCgu---AGCA-------UUU------------UAGCGCGCCaCG- -5'
26035 3' -52.3 NC_005342.2 + 22002 0.67 0.813181
Target:  5'- uCGGCGCGaaUCag-----CGCGCGG-GCg -3'
miRNA:   3'- -GCCGCGU--AGcauuuuaGCGCGCCaCG- -5'
26035 3' -52.3 NC_005342.2 + 33162 0.67 0.813181
Target:  5'- cCGGCaGCAUUGgcAGcggCGCGcCGG-GCg -3'
miRNA:   3'- -GCCG-CGUAGCauUUua-GCGC-GCCaCG- -5'
26035 3' -52.3 NC_005342.2 + 9578 0.67 0.803482
Target:  5'- cCGGCGCGgcaUCGgccGGUUGCGCaccGGcUGCc -3'
miRNA:   3'- -GCCGCGU---AGCauuUUAGCGCG---CC-ACG- -5'
26035 3' -52.3 NC_005342.2 + 1249 0.67 0.803482
Target:  5'- uGGCGCGcCGccugg-CGCGCGuUGCg -3'
miRNA:   3'- gCCGCGUaGCauuuuaGCGCGCcACG- -5'
26035 3' -52.3 NC_005342.2 + 12252 0.67 0.793595
Target:  5'- aGGCGaCcgCGaaccAGGUCGCGagcaCGGUGCu -3'
miRNA:   3'- gCCGC-GuaGCau--UUUAGCGC----GCCACG- -5'
26035 3' -52.3 NC_005342.2 + 19566 0.67 0.793595
Target:  5'- uCGGCGCGgcacaaGggGAAUCGCGCGcGa-- -3'
miRNA:   3'- -GCCGCGUag----CauUUUAGCGCGC-Cacg -5'
26035 3' -52.3 NC_005342.2 + 28477 0.67 0.793595
Target:  5'- cCGaGCGCcgCGUcgac-CGCGCGGgucGCg -3'
miRNA:   3'- -GC-CGCGuaGCAuuuuaGCGCGCCa--CG- -5'
26035 3' -52.3 NC_005342.2 + 3247 0.67 0.773303
Target:  5'- -aGCGCGcCGUGguAGAUCGUaUGGUGCu -3'
miRNA:   3'- gcCGCGUaGCAU--UUUAGCGcGCCACG- -5'
26035 3' -52.3 NC_005342.2 + 12964 0.67 0.773303
Target:  5'- gGcGCGCAUCGcAAAucgacguUCGCGcCGG-GCa -3'
miRNA:   3'- gC-CGCGUAGCaUUUu------AGCGC-GCCaCG- -5'
26035 3' -52.3 NC_005342.2 + 37091 0.67 0.773303
Target:  5'- uCGGCGCAa-GUGAcuGUCGCGcCGGcGUu -3'
miRNA:   3'- -GCCGCGUagCAUUu-UAGCGC-GCCaCG- -5'
26035 3' -52.3 NC_005342.2 + 1748 0.67 0.773303
Target:  5'- cCGGCGCGcuugcagccuUUGUAAuAGUCGCGCaGUa- -3'
miRNA:   3'- -GCCGCGU----------AGCAUU-UUAGCGCGcCAcg -5'
26035 3' -52.3 NC_005342.2 + 3181 0.67 0.773303
Target:  5'- gGGCGCGgc-------CGCGCGGUGUu -3'
miRNA:   3'- gCCGCGUagcauuuuaGCGCGCCACG- -5'
26035 3' -52.3 NC_005342.2 + 13162 0.67 0.772272
Target:  5'- gGGCGCGauacgaUCGUGugcaggcgcGUCGCGUggacuucGGUGCc -3'
miRNA:   3'- gCCGCGU------AGCAUuu-------UAGCGCG-------CCACG- -5'
26035 3' -52.3 NC_005342.2 + 36690 0.68 0.766052
Target:  5'- aCGGCGCAguucaacagCGCGCGGcaacGCg -3'
miRNA:   3'- -GCCGCGUagcauuuuaGCGCGCCa---CG- -5'
26035 3' -52.3 NC_005342.2 + 10187 0.68 0.762922
Target:  5'- gCGGC-CGUCGgcaucAAAgcugCGCGCGGUcuGCu -3'
miRNA:   3'- -GCCGcGUAGCau---UUUa---GCGCGCCA--CG- -5'
26035 3' -52.3 NC_005342.2 + 41391 0.68 0.762922
Target:  5'- gCGGCGCGcCGUGGcggCGaUGCGG-GCu -3'
miRNA:   3'- -GCCGCGUaGCAUUuuaGC-GCGCCaCG- -5'
26035 3' -52.3 NC_005342.2 + 28371 0.68 0.7524
Target:  5'- --uCGCGUCGUu-GAUCGCGCGcgauuccccuuGUGCc -3'
miRNA:   3'- gccGCGUAGCAuuUUAGCGCGC-----------CACG- -5'
26035 3' -52.3 NC_005342.2 + 29640 0.68 0.7524
Target:  5'- aCGGCGUgaggAUCGUGcgcaCGCGC-GUGCc -3'
miRNA:   3'- -GCCGCG----UAGCAUuuuaGCGCGcCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.