miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26035 5' -58.9 NC_005342.2 + 605 0.67 0.414608
Target:  5'- uCGGCgacGCGCAGCUgaaugaaCGCCuGCGgGu -3'
miRNA:   3'- -GCCGa--CGCGUCGGaaa----GUGGuCGCgC- -5'
26035 5' -58.9 NC_005342.2 + 30883 0.67 0.414608
Target:  5'- uCGGCUGacagguagaccuUGUGGCCcggUUCGCCgauguuccGGCGCGg -3'
miRNA:   3'- -GCCGAC------------GCGUCGGa--AAGUGG--------UCGCGC- -5'
26035 5' -58.9 NC_005342.2 + 14622 0.67 0.414608
Target:  5'- aCGGCUGCGCAGUUUg---UgAGCGUa -3'
miRNA:   3'- -GCCGACGCGUCGGAaaguGgUCGCGc -5'
26035 5' -58.9 NC_005342.2 + 28327 0.67 0.405347
Target:  5'- aCGGCcaGCGuCGGCCgcgcUCGCC-GCGCu -3'
miRNA:   3'- -GCCGa-CGC-GUCGGaa--AGUGGuCGCGc -5'
26035 5' -58.9 NC_005342.2 + 32236 0.67 0.405347
Target:  5'- cCGGaaGCGUuuGCCgacgUCGCgCGGCGCGc -3'
miRNA:   3'- -GCCgaCGCGu-CGGaa--AGUG-GUCGCGC- -5'
26035 5' -58.9 NC_005342.2 + 45910 0.67 0.405347
Target:  5'- gGGCUGgGCGcGUCUcgCGCCGGaucaGCGc -3'
miRNA:   3'- gCCGACgCGU-CGGAaaGUGGUCg---CGC- -5'
26035 5' -58.9 NC_005342.2 + 21888 0.67 0.396216
Target:  5'- cCGGaaGCGCcGCCg--CugCGGCGCc -3'
miRNA:   3'- -GCCgaCGCGuCGGaaaGugGUCGCGc -5'
26035 5' -58.9 NC_005342.2 + 44761 0.67 0.387219
Target:  5'- gCGGC-GCGCAGaCgCUgaaCACC-GCGCGg -3'
miRNA:   3'- -GCCGaCGCGUC-G-GAaa-GUGGuCGCGC- -5'
26035 5' -58.9 NC_005342.2 + 38084 0.67 0.387219
Target:  5'- aCGcGCUGuCGCGuGUCgggugCGCCGGCGUGa -3'
miRNA:   3'- -GC-CGAC-GCGU-CGGaaa--GUGGUCGCGC- -5'
26035 5' -58.9 NC_005342.2 + 11198 0.67 0.387219
Target:  5'- uCGG--GCGCGGCUccUUGCCGGCGCu -3'
miRNA:   3'- -GCCgaCGCGUCGGaaAGUGGUCGCGc -5'
26035 5' -58.9 NC_005342.2 + 40120 0.67 0.387219
Target:  5'- gGGCgaGCGCgAGCUggaaaUgGCCGGCGCa -3'
miRNA:   3'- gCCGa-CGCG-UCGGaa---AgUGGUCGCGc -5'
26035 5' -58.9 NC_005342.2 + 45687 0.67 0.378358
Target:  5'- gCGGCgagGCGUggugucccGGCCUgcCACuCGGCGCc -3'
miRNA:   3'- -GCCGa--CGCG--------UCGGAaaGUG-GUCGCGc -5'
26035 5' -58.9 NC_005342.2 + 30189 0.68 0.369634
Target:  5'- aCGGCUGCGCcuaCCUUgucgaGCCcgAGCGUGc -3'
miRNA:   3'- -GCCGACGCGuc-GGAAag---UGG--UCGCGC- -5'
26035 5' -58.9 NC_005342.2 + 21100 0.68 0.369634
Target:  5'- gGGCU-CGCAGUg-UUUGCCgAGCGCGa -3'
miRNA:   3'- gCCGAcGCGUCGgaAAGUGG-UCGCGC- -5'
26035 5' -58.9 NC_005342.2 + 38560 0.68 0.361049
Target:  5'- aCGGCgUGCGCAGCC---CGCagGGCaGCGa -3'
miRNA:   3'- -GCCG-ACGCGUCGGaaaGUGg-UCG-CGC- -5'
26035 5' -58.9 NC_005342.2 + 13878 0.68 0.361049
Target:  5'- gGGCUGCGCGGCg----GCCGuCGCGa -3'
miRNA:   3'- gCCGACGCGUCGgaaagUGGUcGCGC- -5'
26035 5' -58.9 NC_005342.2 + 19625 0.68 0.352603
Target:  5'- gCGGCgaGCGCGGCCga-CGCUGGC-CGu -3'
miRNA:   3'- -GCCGa-CGCGUCGGaaaGUGGUCGcGC- -5'
26035 5' -58.9 NC_005342.2 + 1291 0.68 0.352603
Target:  5'- uCGGCgcGCGCcGCCUUggCugC-GCGCGa -3'
miRNA:   3'- -GCCGa-CGCGuCGGAAa-GugGuCGCGC- -5'
26035 5' -58.9 NC_005342.2 + 20549 0.68 0.352603
Target:  5'- uGGCcGCGCcGCUgaUCGUCGGCGCGu -3'
miRNA:   3'- gCCGaCGCGuCGGaaAGUGGUCGCGC- -5'
26035 5' -58.9 NC_005342.2 + 19260 0.68 0.344298
Target:  5'- gCGGCcGCGCAGCUgaUUGCCGcguucgaccGCGUGa -3'
miRNA:   3'- -GCCGaCGCGUCGGaaAGUGGU---------CGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.