miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26036 3' -53.5 NC_005342.2 + 21453 0.66 0.77819
Target:  5'- gCCGGaCUucaucgacGGAaAUGGCGUGCGgcacgCGACg -3'
miRNA:   3'- -GGCCaGA--------CCUaUACCGCGUGUa----GCUG- -5'
26036 3' -53.5 NC_005342.2 + 31977 0.66 0.77819
Target:  5'- gCGGccgaaagccuUCcGGA--UGGCGCGgGUCGGCg -3'
miRNA:   3'- gGCC----------AGaCCUauACCGCGUgUAGCUG- -5'
26036 3' -53.5 NC_005342.2 + 40572 0.66 0.77819
Target:  5'- uCUGGUCgccGGcgAUGGuCGCGCGacUCGGu -3'
miRNA:   3'- -GGCCAGa--CCuaUACC-GCGUGU--AGCUg -5'
26036 3' -53.5 NC_005342.2 + 1566 0.66 0.767948
Target:  5'- uUCGGUaUUGGucgguUGGgGCAUGUCGAUa -3'
miRNA:   3'- -GGCCA-GACCuau--ACCgCGUGUAGCUG- -5'
26036 3' -53.5 NC_005342.2 + 13811 0.67 0.747039
Target:  5'- aCGGUUcGGcgAcgGGCGCcGCGUCGAg -3'
miRNA:   3'- gGCCAGaCCuaUa-CCGCG-UGUAGCUg -5'
26036 3' -53.5 NC_005342.2 + 28828 0.67 0.719152
Target:  5'- uCCGGUCagUGGAUAgucGGCggccgaucauaguccGCcaucGCGUCGGCg -3'
miRNA:   3'- -GGCCAG--ACCUAUa--CCG---------------CG----UGUAGCUG- -5'
26036 3' -53.5 NC_005342.2 + 29521 0.68 0.66958
Target:  5'- aCGGUCaccgggccguugaUGGcgAUcGGCGCGCcgccgGUCGACu -3'
miRNA:   3'- gGCCAG-------------ACCuaUA-CCGCGUG-----UAGCUG- -5'
26036 3' -53.5 NC_005342.2 + 41381 0.69 0.625979
Target:  5'- gCGGcgCUGGGc--GGCGCGCcgUGGCg -3'
miRNA:   3'- gGCCa-GACCUauaCCGCGUGuaGCUG- -5'
26036 3' -53.5 NC_005342.2 + 12326 0.7 0.559256
Target:  5'- uUCGGcCUGuucgccGAUGUGGCGUAUAaCGGCg -3'
miRNA:   3'- -GGCCaGAC------CUAUACCGCGUGUaGCUG- -5'
26036 3' -53.5 NC_005342.2 + 17911 0.7 0.537407
Target:  5'- gCCGGUgcggccgcgcgcCUGGcggGUGGCGuCGCAggugCGACg -3'
miRNA:   3'- -GGCCA------------GACCua-UACCGC-GUGUa---GCUG- -5'
26036 3' -53.5 NC_005342.2 + 7015 0.71 0.505216
Target:  5'- gUCGGUUUGaacUGUGcGCGCAgAUCGGCg -3'
miRNA:   3'- -GGCCAGACcu-AUAC-CGCGUgUAGCUG- -5'
26036 3' -53.5 NC_005342.2 + 10569 0.72 0.414351
Target:  5'- gCCGGcCgacgagcGGGUcgGGCGCGCGcUCGAUg -3'
miRNA:   3'- -GGCCaGa------CCUAuaCCGCGUGU-AGCUG- -5'
26036 3' -53.5 NC_005342.2 + 17439 0.74 0.318055
Target:  5'- cCCGGgcgCcGGAUGUGGCGCAacgCGAa -3'
miRNA:   3'- -GGCCa--GaCCUAUACCGCGUguaGCUg -5'
26036 3' -53.5 NC_005342.2 + 7928 0.76 0.273059
Target:  5'- cCCGGguuuUCgaaaGAUcgGGCGUACAUCGACa -3'
miRNA:   3'- -GGCC----AGac--CUAuaCCGCGUGUAGCUG- -5'
26036 3' -53.5 NC_005342.2 + 40893 1.08 0.001646
Target:  5'- gCCGGUCUGGAUAUGGCGCACAUCGAUu -3'
miRNA:   3'- -GGCCAGACCUAUACCGCGUGUAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.