miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26037 3' -55.7 NC_005342.2 + 38550 0.66 0.621045
Target:  5'- gGCgaaccggacgGCGuGCGCAGccCGCAGGGCAg- -3'
miRNA:   3'- aCGa---------CGUcUGCGUUa-GCGUCCCGUag -5'
26037 3' -55.7 NC_005342.2 + 26401 0.66 0.621045
Target:  5'- gGCUGCAG-CGCGGaaaGUGGgauaGGCGUCa -3'
miRNA:   3'- aCGACGUCuGCGUUag-CGUC----CCGUAG- -5'
26037 3' -55.7 NC_005342.2 + 7065 0.66 0.599595
Target:  5'- gUGCgccauauccagaccgGCAGcAUGCAAUCGCAGcGCAa- -3'
miRNA:   3'- -ACGa--------------CGUC-UGCGUUAGCGUCcCGUag -5'
26037 3' -55.7 NC_005342.2 + 45015 0.66 0.598469
Target:  5'- aGCUcgAGGCGU--UCGagaAGGGCAUCg -3'
miRNA:   3'- aCGAcgUCUGCGuuAGCg--UCCCGUAG- -5'
26037 3' -55.7 NC_005342.2 + 17332 0.66 0.587221
Target:  5'- cGCUGUAuaGCGCA--CGCAGcGGCGUg -3'
miRNA:   3'- aCGACGUc-UGCGUuaGCGUC-CCGUAg -5'
26037 3' -55.7 NC_005342.2 + 20954 0.66 0.587221
Target:  5'- cGggGCGGACGCAAaCGCGcgcggcgcGGGCGa- -3'
miRNA:   3'- aCgaCGUCUGCGUUaGCGU--------CCCGUag -5'
26037 3' -55.7 NC_005342.2 + 44982 0.66 0.587221
Target:  5'- cGCgGCGGACGCGccggcgagcGUCuacgGCAuuccguugacGGGCGUCa -3'
miRNA:   3'- aCGaCGUCUGCGU---------UAG----CGU----------CCCGUAG- -5'
26037 3' -55.7 NC_005342.2 + 11086 0.66 0.587221
Target:  5'- cGCUGCGGgaugccgcACGUGAUCGCGucguGcGGCGUg -3'
miRNA:   3'- aCGACGUC--------UGCGUUAGCGU----C-CCGUAg -5'
26037 3' -55.7 NC_005342.2 + 27010 0.66 0.576013
Target:  5'- uUGCguccgGCcccguGGCGUAGcCGCcGGGCGUCg -3'
miRNA:   3'- -ACGa----CGu----CUGCGUUaGCGuCCCGUAG- -5'
26037 3' -55.7 NC_005342.2 + 13154 0.66 0.576013
Target:  5'- cGCcgacCGGGCGCGAUacgaucgugUGCAGGcGCGUCg -3'
miRNA:   3'- aCGac--GUCUGCGUUA---------GCGUCC-CGUAG- -5'
26037 3' -55.7 NC_005342.2 + 36856 0.67 0.553752
Target:  5'- cGCcGCAcGACGCGAUCaCGuGcGGCAUCc -3'
miRNA:   3'- aCGaCGU-CUGCGUUAGcGU-C-CCGUAG- -5'
26037 3' -55.7 NC_005342.2 + 17101 0.67 0.553752
Target:  5'- gGCgGC-GACGCGuUCGCcGGGC-UCg -3'
miRNA:   3'- aCGaCGuCUGCGUuAGCGuCCCGuAG- -5'
26037 3' -55.7 NC_005342.2 + 36022 0.67 0.553752
Target:  5'- cGCcGCccgaGUAGUCGCcGGGCGUCg -3'
miRNA:   3'- aCGaCGucugCGUUAGCGuCCCGUAG- -5'
26037 3' -55.7 NC_005342.2 + 4983 0.67 0.547122
Target:  5'- uUGCgccccgucucacugGCAGAUGCGG-CGC-GGGCAUg -3'
miRNA:   3'- -ACGa-------------CGUCUGCGUUaGCGuCCCGUAg -5'
26037 3' -55.7 NC_005342.2 + 24623 0.67 0.536129
Target:  5'- cGC-GCAGGCgGCcaagaauucgaucacGGUCGCAGGGaCGUUg -3'
miRNA:   3'- aCGaCGUCUG-CG---------------UUAGCGUCCC-GUAG- -5'
26037 3' -55.7 NC_005342.2 + 16922 0.67 0.531753
Target:  5'- gGCauUGCGGGCGCcg-UGCucGGCGUCg -3'
miRNA:   3'- aCG--ACGUCUGCGuuaGCGucCCGUAG- -5'
26037 3' -55.7 NC_005342.2 + 6582 0.67 0.531753
Target:  5'- cGCcGCccAGcgcCGCAGUCGCAGGuaAUCa -3'
miRNA:   3'- aCGaCG--UCu--GCGUUAGCGUCCcgUAG- -5'
26037 3' -55.7 NC_005342.2 + 36415 0.67 0.531753
Target:  5'- aGC-GCAuGugGCAAUCGCGucugcgcaacgcGGGCuUCg -3'
miRNA:   3'- aCGaCGU-CugCGUUAGCGU------------CCCGuAG- -5'
26037 3' -55.7 NC_005342.2 + 1112 0.67 0.52848
Target:  5'- gUGCUGCGcgcGACGUugcacugcauauccGAUCGCGGcGGCuugcuUCg -3'
miRNA:   3'- -ACGACGU---CUGCG--------------UUAGCGUC-CCGu----AG- -5'
26037 3' -55.7 NC_005342.2 + 46629 0.67 0.520871
Target:  5'- aUGCUGCAGcgcCGCGAgcgcCGCGaaGCAUCg -3'
miRNA:   3'- -ACGACGUCu--GCGUUa---GCGUccCGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.