miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26037 3' -55.7 NC_005342.2 + 5171 0.7 0.344965
Target:  5'- cGcCUGCAGGCGCGgcgucggcaccGUCGCaaacucGGGGUAUUc -3'
miRNA:   3'- aC-GACGUCUGCGU-----------UAGCG------UCCCGUAG- -5'
26037 3' -55.7 NC_005342.2 + 18105 0.71 0.320087
Target:  5'- gGCgGCGG-C-CAAggcgCGCAGGGCAUCu -3'
miRNA:   3'- aCGaCGUCuGcGUUa---GCGUCCCGUAG- -5'
26037 3' -55.7 NC_005342.2 + 4983 0.67 0.547122
Target:  5'- uUGCgccccgucucacugGCAGAUGCGG-CGC-GGGCAUg -3'
miRNA:   3'- -ACGa-------------CGUCUGCGUUaGCGuCCCGUAg -5'
26037 3' -55.7 NC_005342.2 + 40364 1.1 0.000459
Target:  5'- gUGCUGCAGACGCAAUCGCAGGGCAUCa -3'
miRNA:   3'- -ACGACGUCUGCGUUAGCGUCCCGUAG- -5'
26037 3' -55.7 NC_005342.2 + 11086 0.66 0.587221
Target:  5'- cGCUGCGGgaugccgcACGUGAUCGCGucguGcGGCGUg -3'
miRNA:   3'- aCGACGUC--------UGCGUUAGCGU----C-CCGUAg -5'
26037 3' -55.7 NC_005342.2 + 27010 0.66 0.576013
Target:  5'- uUGCguccgGCcccguGGCGUAGcCGCcGGGCGUCg -3'
miRNA:   3'- -ACGa----CGu----CUGCGUUaGCGuCCCGUAG- -5'
26037 3' -55.7 NC_005342.2 + 17101 0.67 0.553752
Target:  5'- gGCgGC-GACGCGuUCGCcGGGC-UCg -3'
miRNA:   3'- aCGaCGuCUGCGUuAGCGuCCCGuAG- -5'
26037 3' -55.7 NC_005342.2 + 24623 0.67 0.536129
Target:  5'- cGC-GCAGGCgGCcaagaauucgaucacGGUCGCAGGGaCGUUg -3'
miRNA:   3'- aCGaCGUCUG-CG---------------UUAGCGUCCC-GUAG- -5'
26037 3' -55.7 NC_005342.2 + 16922 0.67 0.531753
Target:  5'- gGCauUGCGGGCGCcg-UGCucGGCGUCg -3'
miRNA:   3'- aCG--ACGUCUGCGuuaGCGucCCGUAG- -5'
26037 3' -55.7 NC_005342.2 + 36415 0.67 0.531753
Target:  5'- aGC-GCAuGugGCAAUCGCGucugcgcaacgcGGGCuUCg -3'
miRNA:   3'- aCGaCGU-CugCGUUAGCGU------------CCCGuAG- -5'
26037 3' -55.7 NC_005342.2 + 15779 0.67 0.520871
Target:  5'- aUGCUGCGGcucguCGCGG-CGCugaAGGGCGc- -3'
miRNA:   3'- -ACGACGUCu----GCGUUaGCG---UCCCGUag -5'
26037 3' -55.7 NC_005342.2 + 14049 0.67 0.520871
Target:  5'- gGC-GCAGuAC-CAGUCGCaucguaccAGGGCAUCc -3'
miRNA:   3'- aCGaCGUC-UGcGUUAGCG--------UCCCGUAG- -5'
26037 3' -55.7 NC_005342.2 + 17169 0.68 0.488781
Target:  5'- -cCUGCAGGCGCucgcGUCGUucGGCGUg -3'
miRNA:   3'- acGACGUCUGCGu---UAGCGucCCGUAg -5'
26037 3' -55.7 NC_005342.2 + 26247 0.68 0.488781
Target:  5'- aGCUGCuGGCGCAcgUGCgcauAGaGcGCGUCg -3'
miRNA:   3'- aCGACGuCUGCGUuaGCG----UC-C-CGUAG- -5'
26037 3' -55.7 NC_005342.2 + 3106 0.69 0.417856
Target:  5'- gGCgacgacagGUAGGCGCGAUCGCcgcgcagacaGGCGUCg -3'
miRNA:   3'- aCGa-------CGUCUGCGUUAGCGuc--------CCGUAG- -5'
26037 3' -55.7 NC_005342.2 + 47217 0.7 0.39036
Target:  5'- gGCUGCAGugGaCAGgcaccuaucaggugcUGCAGGGCGc- -3'
miRNA:   3'- aCGACGUCugC-GUUa--------------GCGUCCCGUag -5'
26037 3' -55.7 NC_005342.2 + 20280 0.71 0.296578
Target:  5'- cGCUGCAGcgcguucagguGCGCGAcUCGCA-GGUGUCa -3'
miRNA:   3'- aCGACGUC-----------UGCGUU-AGCGUcCCGUAG- -5'
26037 3' -55.7 NC_005342.2 + 23662 0.71 0.296578
Target:  5'- gGCUGUuccAGgucGCGCAGUCGCcGGGCGa- -3'
miRNA:   3'- aCGACG---UC---UGCGUUAGCGuCCCGUag -5'
26037 3' -55.7 NC_005342.2 + 33107 0.73 0.253632
Target:  5'- gUGCUGCuGACGCGccUGCAGcagcucuccGGCGUCa -3'
miRNA:   3'- -ACGACGuCUGCGUuaGCGUC---------CCGUAG- -5'
26037 3' -55.7 NC_005342.2 + 16407 0.78 0.106658
Target:  5'- cGCUGCAGcucuacACGCugaucucgcCGCAGGGCAUCu -3'
miRNA:   3'- aCGACGUC------UGCGuua------GCGUCCCGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.