miRNA display CGI


Results 21 - 40 of 84 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26038 3' -57.5 NC_005342.2 + 33093 0.66 0.55762
Target:  5'- uGCUGCcCGaUCgCGuagaACGGCGAUgccuGCGGCg -3'
miRNA:   3'- -UGAUGaGC-AG-GC----UGCCGCUGu---CGCCG- -5'
26038 3' -57.5 NC_005342.2 + 17919 0.66 0.551243
Target:  5'- gGCcGCgCGcCUGGCGgguggcgucgcagguGCGACGGCGGCc -3'
miRNA:   3'- -UGaUGaGCaGGCUGC---------------CGCUGUCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 38500 0.66 0.547005
Target:  5'- --aGCUCGagcagCuCGGCGGCGgu-GCGGCg -3'
miRNA:   3'- ugaUGAGCa----G-GCUGCCGCuguCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 3491 0.67 0.536454
Target:  5'- aGCUGCUgCGgCUGAuCGGCGuaaAGCGGg -3'
miRNA:   3'- -UGAUGA-GCaGGCU-GCCGCug-UCGCCg -5'
26038 3' -57.5 NC_005342.2 + 12875 0.67 0.536454
Target:  5'- -gUGC-CGUCaGGCGGCuuGGgGGCGGCu -3'
miRNA:   3'- ugAUGaGCAGgCUGCCG--CUgUCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 9027 0.67 0.536454
Target:  5'- cGCaGCUCGgCCGACGG-GAUGcGCGGg -3'
miRNA:   3'- -UGaUGAGCaGGCUGCCgCUGU-CGCCg -5'
26038 3' -57.5 NC_005342.2 + 19095 0.67 0.525975
Target:  5'- gGCUACg---CCGAC-GCGAUGGCGGa -3'
miRNA:   3'- -UGAUGagcaGGCUGcCGCUGUCGCCg -5'
26038 3' -57.5 NC_005342.2 + 28471 0.67 0.525975
Target:  5'- aACUGCccgagcgccgcgUCGaCCGcgcgggucGCGGCGGC-GCGGCu -3'
miRNA:   3'- -UGAUG------------AGCaGGC--------UGCCGCUGuCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 15572 0.67 0.525975
Target:  5'- cGCUGCUCGUCgGucACGGUuuCGGCGa- -3'
miRNA:   3'- -UGAUGAGCAGgC--UGCCGcuGUCGCcg -5'
26038 3' -57.5 NC_005342.2 + 41404 0.67 0.515575
Target:  5'- -gUGCUCGacgCgGGCGGCaACuucgGGCGGCa -3'
miRNA:   3'- ugAUGAGCa--GgCUGCCGcUG----UCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 8638 0.67 0.514539
Target:  5'- cUUGCUCGUgacggugCCGuCGGCGuuCAGCacGGCg -3'
miRNA:   3'- uGAUGAGCA-------GGCuGCCGCu-GUCG--CCG- -5'
26038 3' -57.5 NC_005342.2 + 17074 0.67 0.505258
Target:  5'- --cGC-CGUuuGgGCGGCGACgccaaggcaGGCGGCg -3'
miRNA:   3'- ugaUGaGCAggC-UGCCGCUG---------UCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 40178 0.67 0.505258
Target:  5'- aACUACUCGUCCGcgcuCGGCcu-GGCGa- -3'
miRNA:   3'- -UGAUGAGCAGGCu---GCCGcugUCGCcg -5'
26038 3' -57.5 NC_005342.2 + 41377 0.67 0.505258
Target:  5'- gACUGCggCGcUgGGCGGCGcGCcguGGCGGCg -3'
miRNA:   3'- -UGAUGa-GCaGgCUGCCGC-UG---UCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 44736 0.67 0.495031
Target:  5'- gGCcGCUCGaCCG-CGcGUGGCgcuGGCGGCg -3'
miRNA:   3'- -UGaUGAGCaGGCuGC-CGCUG---UCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 1477 0.67 0.495031
Target:  5'- aACUGCgCGagCGACGGCGAguCGGCcuGCa -3'
miRNA:   3'- -UGAUGaGCagGCUGCCGCU--GUCGc-CG- -5'
26038 3' -57.5 NC_005342.2 + 39246 0.67 0.495031
Target:  5'- aGCUG-UCGUCCaACGGCaagaugaucgcgGACucgAGCGGCg -3'
miRNA:   3'- -UGAUgAGCAGGcUGCCG------------CUG---UCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 27448 0.68 0.484899
Target:  5'- aACgGCgCGg-CGGCGGcCGGCAGCGGUu -3'
miRNA:   3'- -UGaUGaGCagGCUGCC-GCUGUCGCCG- -5'
26038 3' -57.5 NC_005342.2 + 17554 0.68 0.484899
Target:  5'- gUUGC-CGccgCCGGCGGCGGCGcgaaCGGCu -3'
miRNA:   3'- uGAUGaGCa--GGCUGCCGCUGUc---GCCG- -5'
26038 3' -57.5 NC_005342.2 + 35573 0.68 0.474868
Target:  5'- --cGCUUGgCCGaagGCGGCGACAcUGGCg -3'
miRNA:   3'- ugaUGAGCaGGC---UGCCGCUGUcGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.