miRNA display CGI


Results 1 - 20 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26039 3' -49.8 NC_005342.2 + 36092 0.66 0.950543
Target:  5'- cCGCGACGaca--AGGugCUCGCGCc- -3'
miRNA:   3'- -GUGUUGCauaagUCUugGAGCGCGcc -5'
26039 3' -49.8 NC_005342.2 + 46847 0.66 0.945776
Target:  5'- uGCAACGUcgcgcgCAGcacggcaccGACUUCGCGCGc -3'
miRNA:   3'- gUGUUGCAuaa---GUC---------UUGGAGCGCGCc -5'
26039 3' -49.8 NC_005342.2 + 13992 0.66 0.945776
Target:  5'- gACAugGUuaugccuuGUUCAGGauAUCUCGUGUGa -3'
miRNA:   3'- gUGUugCA--------UAAGUCU--UGGAGCGCGCc -5'
26039 3' -49.8 NC_005342.2 + 30639 0.66 0.940717
Target:  5'- aUACAGCGcgaUCAGAucauCCUCGgGCa- -3'
miRNA:   3'- -GUGUUGCauaAGUCUu---GGAGCgCGcc -5'
26039 3' -49.8 NC_005342.2 + 1818 0.66 0.940717
Target:  5'- cCAgAGCGUG--CAGGccgGCgUCGUGCGGu -3'
miRNA:   3'- -GUgUUGCAUaaGUCU---UGgAGCGCGCC- -5'
26039 3' -49.8 NC_005342.2 + 12250 0.66 0.940717
Target:  5'- gACAACGUAcaCGGcACCggcggCGCGCa- -3'
miRNA:   3'- gUGUUGCAUaaGUCuUGGa----GCGCGcc -5'
26039 3' -49.8 NC_005342.2 + 18362 0.66 0.935363
Target:  5'- aACGGCGUG-UCGuuuAACCUCGC-CGGc -3'
miRNA:   3'- gUGUUGCAUaAGUc--UUGGAGCGcGCC- -5'
26039 3' -49.8 NC_005342.2 + 25490 0.66 0.935363
Target:  5'- gCugGACaccaUGUUCAcGAGCCUCGgGCaGGu -3'
miRNA:   3'- -GugUUGc---AUAAGU-CUUGGAGCgCG-CC- -5'
26039 3' -49.8 NC_005342.2 + 23683 0.66 0.934811
Target:  5'- uGCAuCGUGgccggCGGAaaaccgagcgauuGgCUCGCGCGGg -3'
miRNA:   3'- gUGUuGCAUaa---GUCU-------------UgGAGCGCGCC- -5'
26039 3' -49.8 NC_005342.2 + 9229 0.66 0.929711
Target:  5'- uCGCcGCGUGcggCAuAGCCuUCGUGCGGa -3'
miRNA:   3'- -GUGuUGCAUaa-GUcUUGG-AGCGCGCC- -5'
26039 3' -49.8 NC_005342.2 + 23866 0.67 0.923761
Target:  5'- gACGACGacGUUCGGGuucguGCCgccguucaUCGUGCGGa -3'
miRNA:   3'- gUGUUGCa-UAAGUCU-----UGG--------AGCGCGCC- -5'
26039 3' -49.8 NC_005342.2 + 28062 0.67 0.923761
Target:  5'- gACGGCGcggAUggccCAGAGCUgcugaGCGCGGg -3'
miRNA:   3'- gUGUUGCa--UAa---GUCUUGGag---CGCGCC- -5'
26039 3' -49.8 NC_005342.2 + 797 0.67 0.923761
Target:  5'- gGCGACGUAgcugCGGucGCCU-GCGCGu -3'
miRNA:   3'- gUGUUGCAUaa--GUCu-UGGAgCGCGCc -5'
26039 3' -49.8 NC_005342.2 + 11038 0.67 0.917513
Target:  5'- uCGCGGCGgaacUCGGcACCggCGCGCGu -3'
miRNA:   3'- -GUGUUGCaua-AGUCuUGGa-GCGCGCc -5'
26039 3' -49.8 NC_005342.2 + 38027 0.67 0.910967
Target:  5'- aCACAACGUgcgGUUC-GAcggcaaacACCU-GCGCGGc -3'
miRNA:   3'- -GUGUUGCA---UAAGuCU--------UGGAgCGCGCC- -5'
26039 3' -49.8 NC_005342.2 + 46335 0.67 0.910967
Target:  5'- gCGCAGCGcAUUCAGGGCUaCGcCGCc- -3'
miRNA:   3'- -GUGUUGCaUAAGUCUUGGaGC-GCGcc -5'
26039 3' -49.8 NC_005342.2 + 17104 0.67 0.904126
Target:  5'- gGCGACGcGUUCGccGGGCUcgCGCGCGa -3'
miRNA:   3'- gUGUUGCaUAAGU--CUUGGa-GCGCGCc -5'
26039 3' -49.8 NC_005342.2 + 37531 0.67 0.896993
Target:  5'- gGCGGCGUGUgUCAGAGCggcuuugagUUUGUGCGa -3'
miRNA:   3'- gUGUUGCAUA-AGUCUUG---------GAGCGCGCc -5'
26039 3' -49.8 NC_005342.2 + 3651 0.68 0.889573
Target:  5'- uCGCGACGg--UCuGAGCCgUCGCgucguagcuGCGGa -3'
miRNA:   3'- -GUGUUGCauaAGuCUUGG-AGCG---------CGCC- -5'
26039 3' -49.8 NC_005342.2 + 14815 0.68 0.889573
Target:  5'- cCACGGCGUGccgaUCAGAAUgaCGC-CGGa -3'
miRNA:   3'- -GUGUUGCAUa---AGUCUUGgaGCGcGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.