Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26039 | 3' | -49.8 | NC_005342.2 | + | 17491 | 0.68 | 0.873889 |
Target: 5'- gUACAGCG-AUUCGGugaguACCUCG-GCGa -3' miRNA: 3'- -GUGUUGCaUAAGUCu----UGGAGCgCGCc -5' |
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26039 | 3' | -49.8 | NC_005342.2 | + | 28182 | 0.68 | 0.873889 |
Target: 5'- gACaAACGUGUaaaugUCAGGcuccugguuGCCUUGCGCGu -3' miRNA: 3'- gUG-UUGCAUA-----AGUCU---------UGGAGCGCGCc -5' |
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26039 | 3' | -49.8 | NC_005342.2 | + | 557 | 0.68 | 0.865639 |
Target: 5'- -uCGACGcauuuuUUCAuGugCUCGCGCGGa -3' miRNA: 3'- guGUUGCau----AAGUcUugGAGCGCGCC- -5' |
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26039 | 3' | -49.8 | NC_005342.2 | + | 3443 | 0.69 | 0.84836 |
Target: 5'- uCGCGGCGUAUUCcuuGAuCUUCGCGaccuCGGu -3' miRNA: 3'- -GUGUUGCAUAAGu--CUuGGAGCGC----GCC- -5' |
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26039 | 3' | -49.8 | NC_005342.2 | + | 35260 | 0.69 | 0.839348 |
Target: 5'- uGCGGCGg--UCAGAACUUgGCcCGGu -3' miRNA: 3'- gUGUUGCauaAGUCUUGGAgCGcGCC- -5' |
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26039 | 3' | -49.8 | NC_005342.2 | + | 34078 | 0.69 | 0.828225 |
Target: 5'- uCGCGACGgccgccgcgCAGcccgugccggccGACUUCGCGCGGc -3' miRNA: 3'- -GUGUUGCauaa-----GUC------------UUGGAGCGCGCC- -5' |
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26039 | 3' | -49.8 | NC_005342.2 | + | 38266 | 0.69 | 0.820631 |
Target: 5'- aCGCGGCGU-UUCGcGAACCgCGUGCGc -3' miRNA: 3'- -GUGUUGCAuAAGU-CUUGGaGCGCGCc -5' |
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26039 | 3' | -49.8 | NC_005342.2 | + | 18504 | 0.69 | 0.810946 |
Target: 5'- aGCGGCGUG--CAGAACUaCGCgaGCGGg -3' miRNA: 3'- gUGUUGCAUaaGUCUUGGaGCG--CGCC- -5' |
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26039 | 3' | -49.8 | NC_005342.2 | + | 13169 | 0.7 | 0.759722 |
Target: 5'- aUACGAuCGUGUgCAGGcGCgUCGCGUGGa -3' miRNA: 3'- -GUGUU-GCAUAaGUCU-UGgAGCGCGCC- -5' |
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26039 | 3' | -49.8 | NC_005342.2 | + | 37078 | 0.71 | 0.727196 |
Target: 5'- aCGCGACGUG--CAccGCgUCGCGCGGc -3' miRNA: 3'- -GUGUUGCAUaaGUcuUGgAGCGCGCC- -5' |
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26039 | 3' | -49.8 | NC_005342.2 | + | 34938 | 0.71 | 0.704979 |
Target: 5'- -uCAGCGUGUcgggcaUCuugauGGACCUCGCGCaGGc -3' miRNA: 3'- guGUUGCAUA------AGu----CUUGGAGCGCG-CC- -5' |
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26039 | 3' | -49.8 | NC_005342.2 | + | 27186 | 0.72 | 0.682454 |
Target: 5'- -cCGAgGUGUggcggCAGAccguGCUUCGCGCGGu -3' miRNA: 3'- guGUUgCAUAa----GUCU----UGGAGCGCGCC- -5' |
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26039 | 3' | -49.8 | NC_005342.2 | + | 4630 | 0.73 | 0.636879 |
Target: 5'- gGCGACGgg--CAG-GCCggCGCGCGGg -3' miRNA: 3'- gUGUUGCauaaGUCuUGGa-GCGCGCC- -5' |
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26039 | 3' | -49.8 | NC_005342.2 | + | 12280 | 0.74 | 0.557333 |
Target: 5'- uGCGGCGUccugCGcgccAGCCUCGCGCGGg -3' miRNA: 3'- gUGUUGCAuaa-GUc---UUGGAGCGCGCC- -5' |
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26039 | 3' | -49.8 | NC_005342.2 | + | 39735 | 1.12 | 0.002217 |
Target: 5'- gCACAACGUAUUCAGAACCUCGCGCGGg -3' miRNA: 3'- -GUGUUGCAUAAGUCUUGGAGCGCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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