miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26039 3' -49.8 NC_005342.2 + 27186 0.72 0.682454
Target:  5'- -cCGAgGUGUggcggCAGAccguGCUUCGCGCGGu -3'
miRNA:   3'- guGUUgCAUAa----GUCU----UGGAGCGCGCC- -5'
26039 3' -49.8 NC_005342.2 + 12280 0.74 0.557333
Target:  5'- uGCGGCGUccugCGcgccAGCCUCGCGCGGg -3'
miRNA:   3'- gUGUUGCAuaa-GUc---UUGGAGCGCGCC- -5'
26039 3' -49.8 NC_005342.2 + 9229 0.66 0.929711
Target:  5'- uCGCcGCGUGcggCAuAGCCuUCGUGCGGa -3'
miRNA:   3'- -GUGuUGCAUaa-GUcUUGG-AGCGCGCC- -5'
26039 3' -49.8 NC_005342.2 + 23866 0.67 0.923761
Target:  5'- gACGACGacGUUCGGGuucguGCCgccguucaUCGUGCGGa -3'
miRNA:   3'- gUGUUGCa-UAAGUCU-----UGG--------AGCGCGCC- -5'
26039 3' -49.8 NC_005342.2 + 3651 0.68 0.889573
Target:  5'- uCGCGACGg--UCuGAGCCgUCGCgucguagcuGCGGa -3'
miRNA:   3'- -GUGUUGCauaAGuCUUGG-AGCG---------CGCC- -5'
26039 3' -49.8 NC_005342.2 + 28182 0.68 0.873889
Target:  5'- gACaAACGUGUaaaugUCAGGcuccugguuGCCUUGCGCGu -3'
miRNA:   3'- gUG-UUGCAUA-----AGUCU---------UGGAGCGCGCc -5'
26039 3' -49.8 NC_005342.2 + 12250 0.66 0.940717
Target:  5'- gACAACGUAcaCGGcACCggcggCGCGCa- -3'
miRNA:   3'- gUGUUGCAUaaGUCuUGGa----GCGCGcc -5'
26039 3' -49.8 NC_005342.2 + 18362 0.66 0.935363
Target:  5'- aACGGCGUG-UCGuuuAACCUCGC-CGGc -3'
miRNA:   3'- gUGUUGCAUaAGUc--UUGGAGCGcGCC- -5'
26039 3' -49.8 NC_005342.2 + 14815 0.68 0.889573
Target:  5'- cCACGGCGUGccgaUCAGAAUgaCGC-CGGa -3'
miRNA:   3'- -GUGUUGCAUa---AGUCUUGgaGCGcGCC- -5'
26039 3' -49.8 NC_005342.2 + 35260 0.69 0.839348
Target:  5'- uGCGGCGg--UCAGAACUUgGCcCGGu -3'
miRNA:   3'- gUGUUGCauaAGUCUUGGAgCGcGCC- -5'
26039 3' -49.8 NC_005342.2 + 37078 0.71 0.727196
Target:  5'- aCGCGACGUG--CAccGCgUCGCGCGGc -3'
miRNA:   3'- -GUGUUGCAUaaGUcuUGgAGCGCGCC- -5'
26039 3' -49.8 NC_005342.2 + 1818 0.66 0.940717
Target:  5'- cCAgAGCGUG--CAGGccgGCgUCGUGCGGu -3'
miRNA:   3'- -GUgUUGCAUaaGUCU---UGgAGCGCGCC- -5'
26039 3' -49.8 NC_005342.2 + 13169 0.7 0.759722
Target:  5'- aUACGAuCGUGUgCAGGcGCgUCGCGUGGa -3'
miRNA:   3'- -GUGUU-GCAUAaGUCU-UGgAGCGCGCC- -5'
26039 3' -49.8 NC_005342.2 + 23683 0.66 0.934811
Target:  5'- uGCAuCGUGgccggCGGAaaaccgagcgauuGgCUCGCGCGGg -3'
miRNA:   3'- gUGUuGCAUaa---GUCU-------------UgGAGCGCGCC- -5'
26039 3' -49.8 NC_005342.2 + 13992 0.66 0.945776
Target:  5'- gACAugGUuaugccuuGUUCAGGauAUCUCGUGUGa -3'
miRNA:   3'- gUGUugCA--------UAAGUCU--UGGAGCGCGCc -5'
26039 3' -49.8 NC_005342.2 + 4630 0.73 0.636879
Target:  5'- gGCGACGgg--CAG-GCCggCGCGCGGg -3'
miRNA:   3'- gUGUUGCauaaGUCuUGGa-GCGCGCC- -5'
26039 3' -49.8 NC_005342.2 + 34078 0.69 0.828225
Target:  5'- uCGCGACGgccgccgcgCAGcccgugccggccGACUUCGCGCGGc -3'
miRNA:   3'- -GUGUUGCauaa-----GUC------------UUGGAGCGCGCC- -5'
26039 3' -49.8 NC_005342.2 + 3443 0.69 0.84836
Target:  5'- uCGCGGCGUAUUCcuuGAuCUUCGCGaccuCGGu -3'
miRNA:   3'- -GUGUUGCAUAAGu--CUuGGAGCGC----GCC- -5'
26039 3' -49.8 NC_005342.2 + 557 0.68 0.865639
Target:  5'- -uCGACGcauuuuUUCAuGugCUCGCGCGGa -3'
miRNA:   3'- guGUUGCau----AAGUcUugGAGCGCGCC- -5'
26039 3' -49.8 NC_005342.2 + 17491 0.68 0.873889
Target:  5'- gUACAGCG-AUUCGGugaguACCUCG-GCGa -3'
miRNA:   3'- -GUGUUGCaUAAGUCu----UGGAGCgCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.