miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26039 5' -51.1 NC_005342.2 + 28566 0.65 0.899824
Target:  5'- gUGCCG-GCuGCGUUCGuaaccugcacgcucGAGCG-CUCGu -3'
miRNA:   3'- -ACGGUgCGuCGCAAGU--------------UUUGCaGAGC- -5'
26039 5' -51.1 NC_005342.2 + 37033 0.66 0.894731
Target:  5'- gGUCGCgGCGGUGcUCGAcGCG-CUCGa -3'
miRNA:   3'- aCGGUG-CGUCGCaAGUUuUGCaGAGC- -5'
26039 5' -51.1 NC_005342.2 + 19469 0.66 0.894731
Target:  5'- cGCCGCGacccGCGcggUCGAcGCGgcgCUCGg -3'
miRNA:   3'- aCGGUGCgu--CGCa--AGUUuUGCa--GAGC- -5'
26039 5' -51.1 NC_005342.2 + 40196 0.66 0.887211
Target:  5'- gGCCugGCGaaGUUCcuGAACGgCUCGu -3'
miRNA:   3'- aCGGugCGUcgCAAGu-UUUGCaGAGC- -5'
26039 5' -51.1 NC_005342.2 + 27308 0.66 0.887211
Target:  5'- cUGCCacugGCGCAGCGccgUUgcGACG-CUCGc -3'
miRNA:   3'- -ACGG----UGCGUCGCa--AGuuUUGCaGAGC- -5'
26039 5' -51.1 NC_005342.2 + 15725 0.66 0.887211
Target:  5'- -uCCACGUAGCGacCGAAuCGUCgCGa -3'
miRNA:   3'- acGGUGCGUCGCaaGUUUuGCAGaGC- -5'
26039 5' -51.1 NC_005342.2 + 7183 0.66 0.887211
Target:  5'- gUGCggaUugGCGGCG--CGAAACGUgUCGa -3'
miRNA:   3'- -ACG---GugCGUCGCaaGUUUUGCAgAGC- -5'
26039 5' -51.1 NC_005342.2 + 29953 0.66 0.879409
Target:  5'- cGCCGCGCGcgaucagcGCGUUCAuGACauacaggcgguuGUCgUCGa -3'
miRNA:   3'- aCGGUGCGU--------CGCAAGUuUUG------------CAG-AGC- -5'
26039 5' -51.1 NC_005342.2 + 12536 0.66 0.871332
Target:  5'- gUGCCugaGCcgacacucGCGUUCGcgacugaaGGGCGUCUCGa -3'
miRNA:   3'- -ACGGug-CGu-------CGCAAGU--------UUUGCAGAGC- -5'
26039 5' -51.1 NC_005342.2 + 37104 0.66 0.871332
Target:  5'- cUGUCGCGcCGGCGUUCuucccgcgcGGCGUCa-- -3'
miRNA:   3'- -ACGGUGC-GUCGCAAGuu-------UUGCAGagc -5'
26039 5' -51.1 NC_005342.2 + 29621 0.66 0.869684
Target:  5'- gGCCACGCgcGGCGUccUCGGccgcuuugccguGCGcCUCGa -3'
miRNA:   3'- aCGGUGCG--UCGCA--AGUUu-----------UGCaGAGC- -5'
26039 5' -51.1 NC_005342.2 + 15201 0.66 0.862986
Target:  5'- cGCUACGCacgugcGGCGcUCAAAGCGa-UCGa -3'
miRNA:   3'- aCGGUGCG------UCGCaAGUUUUGCagAGC- -5'
26039 5' -51.1 NC_005342.2 + 41674 0.66 0.862986
Target:  5'- gGCUGCGCAGCcuUUCAccAGCGcgCUCGu -3'
miRNA:   3'- aCGGUGCGUCGc-AAGUu-UUGCa-GAGC- -5'
26039 5' -51.1 NC_005342.2 + 44788 0.66 0.860431
Target:  5'- gGCCGCGCccgggcaagaaaacGGCGgacugCGAGGCGauaCUCGa -3'
miRNA:   3'- aCGGUGCG--------------UCGCaa---GUUUUGCa--GAGC- -5'
26039 5' -51.1 NC_005342.2 + 10474 0.67 0.85438
Target:  5'- cUGCUugGCcuGCGUgaCGAAACGacgCUCGu -3'
miRNA:   3'- -ACGGugCGu-CGCAa-GUUUUGCa--GAGC- -5'
26039 5' -51.1 NC_005342.2 + 9798 0.67 0.853505
Target:  5'- cGCCACGgAucGacaaaGUUCGAcgcggcaAGCGUCUCGa -3'
miRNA:   3'- aCGGUGCgU--Cg----CAAGUU-------UUGCAGAGC- -5'
26039 5' -51.1 NC_005342.2 + 4230 0.67 0.845522
Target:  5'- aUGCCGCGCA-CGUUCGu-GCGcC-CGg -3'
miRNA:   3'- -ACGGUGCGUcGCAAGUuuUGCaGaGC- -5'
26039 5' -51.1 NC_005342.2 + 3627 0.67 0.845522
Target:  5'- cUGCuCGCGCGGCGgcagCGGcACGgugCUCu -3'
miRNA:   3'- -ACG-GUGCGUCGCaa--GUUuUGCa--GAGc -5'
26039 5' -51.1 NC_005342.2 + 29069 0.67 0.836421
Target:  5'- aGCCGCGCGGCuGcUUAAcACGcacCUCGa -3'
miRNA:   3'- aCGGUGCGUCG-CaAGUUuUGCa--GAGC- -5'
26039 5' -51.1 NC_005342.2 + 40669 0.67 0.836421
Target:  5'- gGUCGCaCGGCaggCGAAACGUUUCGg -3'
miRNA:   3'- aCGGUGcGUCGcaaGUUUUGCAGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.