miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26039 5' -51.1 NC_005342.2 + 39774 1.1 0.00192
Target:  5'- cUGCCACGCAGCGUUCAAAACGUCUCGa -3'
miRNA:   3'- -ACGGUGCGUCGCAAGUUUUGCAGAGC- -5'
26039 5' -51.1 NC_005342.2 + 3187 0.84 0.110402
Target:  5'- gGCCGCGCGGUGUUCA--GCGUCUgCGc -3'
miRNA:   3'- aCGGUGCGUCGCAAGUuuUGCAGA-GC- -5'
26039 5' -51.1 NC_005342.2 + 30955 0.78 0.278756
Target:  5'- gGCCGCGCGGCGcagCGc--CGUCUCGg -3'
miRNA:   3'- aCGGUGCGUCGCaa-GUuuuGCAGAGC- -5'
26039 5' -51.1 NC_005342.2 + 25587 0.77 0.293738
Target:  5'- uUGCCACGCGGCGacgauAAACGcCUCGc -3'
miRNA:   3'- -ACGGUGCGUCGCaagu-UUUGCaGAGC- -5'
26039 5' -51.1 NC_005342.2 + 37525 0.75 0.396653
Target:  5'- cUGCUugGCGGCGUgugUCAGAGCGgCUUu -3'
miRNA:   3'- -ACGGugCGUCGCA---AGUUUUGCaGAGc -5'
26039 5' -51.1 NC_005342.2 + 21787 0.75 0.403331
Target:  5'- gUGCCGCGCgaguggcagcugaaAGCGUUCGAGGCauucCUCGa -3'
miRNA:   3'- -ACGGUGCG--------------UCGCAAGUUUUGca--GAGC- -5'
26039 5' -51.1 NC_005342.2 + 16841 0.74 0.425767
Target:  5'- cGCCACGCGGCGcgCAAGAaGgagUUCGa -3'
miRNA:   3'- aCGGUGCGUCGCaaGUUUUgCa--GAGC- -5'
26039 5' -51.1 NC_005342.2 + 30575 0.74 0.435751
Target:  5'- cGCCugGCGGUucUCcucGGACGUCUCGc -3'
miRNA:   3'- aCGGugCGUCGcaAGu--UUUGCAGAGC- -5'
26039 5' -51.1 NC_005342.2 + 36829 0.74 0.466488
Target:  5'- aGCUGCGgGGCGUgcUCGAAGCG-CUCa -3'
miRNA:   3'- aCGGUGCgUCGCA--AGUUUUGCaGAGc -5'
26039 5' -51.1 NC_005342.2 + 34117 0.72 0.542159
Target:  5'- cGCgGCGCGGCGcgcUCAAuGCG-CUCGa -3'
miRNA:   3'- aCGgUGCGUCGCa--AGUUuUGCaGAGC- -5'
26039 5' -51.1 NC_005342.2 + 44611 0.72 0.542159
Target:  5'- cGCUGCGcCAGCuGaUCGAGcuGCGUCUCGa -3'
miRNA:   3'- aCGGUGC-GUCG-CaAGUUU--UGCAGAGC- -5'
26039 5' -51.1 NC_005342.2 + 32608 0.72 0.553329
Target:  5'- gGCCACGUuacaagcauucGGCGUUCAGcgcgcGCGUCUgCGc -3'
miRNA:   3'- aCGGUGCG-----------UCGCAAGUUu----UGCAGA-GC- -5'
26039 5' -51.1 NC_005342.2 + 22771 0.72 0.553329
Target:  5'- aGUCGCGCAGUgaGUUCGAGACG-CggCGg -3'
miRNA:   3'- aCGGUGCGUCG--CAAGUUUUGCaGa-GC- -5'
26039 5' -51.1 NC_005342.2 + 26998 0.71 0.5986
Target:  5'- cGCCGCGC-GCGUUU---GCGUC-CGg -3'
miRNA:   3'- aCGGUGCGuCGCAAGuuuUGCAGaGC- -5'
26039 5' -51.1 NC_005342.2 + 26829 0.71 0.610019
Target:  5'- uUGCgCGCGCu-CGUUCAGGGCG-CUCGc -3'
miRNA:   3'- -ACG-GUGCGucGCAAGUUUUGCaGAGC- -5'
26039 5' -51.1 NC_005342.2 + 3379 0.71 0.621459
Target:  5'- uUGUCGCGCgcGGCGaucUUCuucAGCGUCUCGc -3'
miRNA:   3'- -ACGGUGCG--UCGC---AAGuu-UUGCAGAGC- -5'
26039 5' -51.1 NC_005342.2 + 45078 0.71 0.643214
Target:  5'- gGCCGCGCAGC-------ACGUCUCu -3'
miRNA:   3'- aCGGUGCGUCGcaaguuuUGCAGAGc -5'
26039 5' -51.1 NC_005342.2 + 19196 0.71 0.644358
Target:  5'- cGCCAaugggauucuCGCGGCGUUCcgcACGgcgCUCGa -3'
miRNA:   3'- aCGGU----------GCGUCGCAAGuuuUGCa--GAGC- -5'
26039 5' -51.1 NC_005342.2 + 31604 0.7 0.655795
Target:  5'- aGCCAUGCgaAGCGUgccaagUCGGAGCcgGUCUUGa -3'
miRNA:   3'- aCGGUGCG--UCGCA------AGUUUUG--CAGAGC- -5'
26039 5' -51.1 NC_005342.2 + 36018 0.7 0.667209
Target:  5'- cGUCgACGCuGCGUgCAAGGCG-CUCGa -3'
miRNA:   3'- aCGG-UGCGuCGCAaGUUUUGCaGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.