miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26039 5' -51.1 NC_005342.2 + 46330 0.67 0.830848
Target:  5'- cGaCCGCGCAGCGcaUUCAGggcuacgccgccgacGACGcUUUCGa -3'
miRNA:   3'- aC-GGUGCGUCGC--AAGUU---------------UUGC-AGAGC- -5'
26039 5' -51.1 NC_005342.2 + 38211 0.67 0.817532
Target:  5'- cGgCACGCAGCGccUCGAcACGUUcuuugUCGa -3'
miRNA:   3'- aCgGUGCGUCGCa-AGUUuUGCAG-----AGC- -5'
26039 5' -51.1 NC_005342.2 + 25626 0.67 0.817532
Target:  5'- cUGCCcuUGCGGCGUcgUCAguucggucgaGAGCGUCUUc -3'
miRNA:   3'- -ACGGu-GCGUCGCA--AGU----------UUUGCAGAGc -5'
26039 5' -51.1 NC_005342.2 + 7874 0.68 0.807766
Target:  5'- gGCCGCGCGGCGUgugCAc--CGUUa-- -3'
miRNA:   3'- aCGGUGCGUCGCAa--GUuuuGCAGagc -5'
26039 5' -51.1 NC_005342.2 + 31082 0.68 0.807766
Target:  5'- aGCgACGCAGcCGcgCGuuuCGUCUCa -3'
miRNA:   3'- aCGgUGCGUC-GCaaGUuuuGCAGAGc -5'
26039 5' -51.1 NC_005342.2 + 42874 0.68 0.797801
Target:  5'- gUGCUGCGCgAGCuGUUCAAcAUG-CUCGu -3'
miRNA:   3'- -ACGGUGCG-UCG-CAAGUUuUGCaGAGC- -5'
26039 5' -51.1 NC_005342.2 + 47559 0.68 0.791731
Target:  5'- cUGCCGCGCAGCcuGUcuugaUCAAGgaucgcgcgcucuacGCG-CUCGg -3'
miRNA:   3'- -ACGGUGCGUCG--CA-----AGUUU---------------UGCaGAGC- -5'
26039 5' -51.1 NC_005342.2 + 32253 0.68 0.787648
Target:  5'- cGUCGCGCGGCGcgCuc-GCGUCg-- -3'
miRNA:   3'- aCGGUGCGUCGCaaGuuuUGCAGagc -5'
26039 5' -51.1 NC_005342.2 + 28887 0.68 0.77732
Target:  5'- gGCCGCGCcgAGUGgc---GACGUCUCu -3'
miRNA:   3'- aCGGUGCG--UCGCaaguuUUGCAGAGc -5'
26039 5' -51.1 NC_005342.2 + 1885 0.68 0.77732
Target:  5'- cGCCAaaucCGCAGCGgcgCAuAACGgcgcccgCUCGu -3'
miRNA:   3'- aCGGU----GCGUCGCaa-GUuUUGCa------GAGC- -5'
26039 5' -51.1 NC_005342.2 + 38121 0.68 0.776278
Target:  5'- gGCCACGgucaagaCGGCGaUCGAGACG-CUUGc -3'
miRNA:   3'- aCGGUGC-------GUCGCaAGUUUUGCaGAGC- -5'
26039 5' -51.1 NC_005342.2 + 9069 0.68 0.766829
Target:  5'- aGCgCGCGCAGCacgggcggCAGGAUGUCgUCGa -3'
miRNA:   3'- aCG-GUGCGUCGcaa-----GUUUUGCAG-AGC- -5'
26039 5' -51.1 NC_005342.2 + 30522 0.68 0.766829
Target:  5'- aUGUUGCGCAGguUGUUCGAGACGg-UCGa -3'
miRNA:   3'- -ACGGUGCGUC--GCAAGUUUUGCagAGC- -5'
26039 5' -51.1 NC_005342.2 + 45858 0.68 0.765772
Target:  5'- cGCCGaacUGCAGCGcgccgaaUUCGAGGCGaugCUCGc -3'
miRNA:   3'- aCGGU---GCGUCGC-------AAGUUUUGCa--GAGC- -5'
26039 5' -51.1 NC_005342.2 + 8145 0.69 0.738884
Target:  5'- gGCCGCGUccaucGCGUacucggugagcggcgUCGAGACGUUUUGa -3'
miRNA:   3'- aCGGUGCGu----CGCA---------------AGUUUUGCAGAGC- -5'
26039 5' -51.1 NC_005342.2 + 38920 0.69 0.734509
Target:  5'- cGCCACGCAGa--UCGGcgucGACGUgUCGc -3'
miRNA:   3'- aCGGUGCGUCgcaAGUU----UUGCAgAGC- -5'
26039 5' -51.1 NC_005342.2 + 11684 0.69 0.734509
Target:  5'- cGCCGgGCGGCGUgcu-GGCGUCcugCGc -3'
miRNA:   3'- aCGGUgCGUCGCAaguuUUGCAGa--GC- -5'
26039 5' -51.1 NC_005342.2 + 47618 0.69 0.712384
Target:  5'- gGCC-UGCAGCuGUUCAAAGCGccgacgggcaUUUCGg -3'
miRNA:   3'- aCGGuGCGUCG-CAAGUUUUGC----------AGAGC- -5'
26039 5' -51.1 NC_005342.2 + 19262 0.69 0.711268
Target:  5'- gGCCGCGCAgcugauugccGCGUUCGAccGCGUgaacaacgcgugcCUCGg -3'
miRNA:   3'- aCGGUGCGU----------CGCAAGUUu-UGCA-------------GAGC- -5'
26039 5' -51.1 NC_005342.2 + 14384 0.69 0.711268
Target:  5'- gGCUGCaGCAGCGUggguuauUCGAGACaaUCUCGg -3'
miRNA:   3'- aCGGUG-CGUCGCA-------AGUUUUGc-AGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.