miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26040 3' -58.2 NC_005342.2 + 9336 0.69 0.358793
Target:  5'- uUGuUGGCCGuGCcGAUCAGCGcgaagCGGCg -3'
miRNA:   3'- -ACcACCGGCcCGuCUAGUUGCa----GCCG- -5'
26040 3' -58.2 NC_005342.2 + 3704 0.69 0.350437
Target:  5'- aGGUGcgcgagaaguGCuCGGGguGAUCG--GUCGGCg -3'
miRNA:   3'- aCCAC----------CG-GCCCguCUAGUugCAGCCG- -5'
26040 3' -58.2 NC_005342.2 + 19547 0.69 0.342221
Target:  5'- aUGG-GcGCCGGucGCAcGGUCGGCG-CGGCa -3'
miRNA:   3'- -ACCaC-CGGCC--CGU-CUAGUUGCaGCCG- -5'
26040 3' -58.2 NC_005342.2 + 3180 0.69 0.334144
Target:  5'- cGGgcgcGGCCGcGCGGuguUCAGCGUCuGCg -3'
miRNA:   3'- aCCa---CCGGCcCGUCu--AGUUGCAGcCG- -5'
26040 3' -58.2 NC_005342.2 + 45899 0.71 0.281543
Target:  5'- gUGGgcgaccagGGCUGGGCgcgucucgcgccGGAUCAGCGcCaGGCg -3'
miRNA:   3'- -ACCa-------CCGGCCCG------------UCUAGUUGCaG-CCG- -5'
26040 3' -58.2 NC_005342.2 + 16638 0.71 0.261093
Target:  5'- ---cGGCCGagacGGCGcuuAUCAACGUCGGCa -3'
miRNA:   3'- accaCCGGC----CCGUc--UAGUUGCAGCCG- -5'
26040 3' -58.2 NC_005342.2 + 5010 0.72 0.227352
Target:  5'- aGGcGGCCaGGCGGccggcuguuggcCGACGUCGGCg -3'
miRNA:   3'- aCCaCCGGcCCGUCua----------GUUGCAGCCG- -5'
26040 3' -58.2 NC_005342.2 + 16914 0.74 0.171828
Target:  5'- aGcUGGCCGGcauuGCGGGcgccgugcUCGGCGUCGGCg -3'
miRNA:   3'- aCcACCGGCC----CGUCU--------AGUUGCAGCCG- -5'
26040 3' -58.2 NC_005342.2 + 32962 0.74 0.158468
Target:  5'- aGGUGGCgaguuuCGcGGC--GUCGGCGUCGGCg -3'
miRNA:   3'- aCCACCG------GC-CCGucUAGUUGCAGCCG- -5'
26040 3' -58.2 NC_005342.2 + 39542 1.12 0.000274
Target:  5'- gUGGUGGCCGGGCAGAUCAACGUCGGCg -3'
miRNA:   3'- -ACCACCGGCCCGUCUAGUUGCAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.