miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26040 5' -57.7 NC_005342.2 + 15488 0.66 0.552274
Target:  5'- cCGGCGGCGcgucaaGCgCGAUguuaGCGGGCa- -3'
miRNA:   3'- aGCCGCUGCaa----CGaGCUG----UGCCCGau -5'
26040 5' -57.7 NC_005342.2 + 35586 0.66 0.542652
Target:  5'- gCGGCGACacuggcgcgccggGCggGGCGCGGGCg- -3'
miRNA:   3'- aGCCGCUGcaa----------CGagCUGUGCCCGau -5'
26040 5' -57.7 NC_005342.2 + 47287 0.66 0.541586
Target:  5'- -gGGCGGCGgcacgaucgcGCUCaccgaGCACGGGCa- -3'
miRNA:   3'- agCCGCUGCaa--------CGAGc----UGUGCCCGau -5'
26040 5' -57.7 NC_005342.2 + 26352 0.66 0.530969
Target:  5'- gCGGCGG-GUUGCUCuuugucaaAUGCGGGCg- -3'
miRNA:   3'- aGCCGCUgCAACGAGc-------UGUGCCCGau -5'
26040 5' -57.7 NC_005342.2 + 5198 0.66 0.530969
Target:  5'- gUCGGUGuCGUagaaCUCGACauGCGGGCc- -3'
miRNA:   3'- -AGCCGCuGCAac--GAGCUG--UGCCCGau -5'
26040 5' -57.7 NC_005342.2 + 18264 0.66 0.530969
Target:  5'- uUCGGCGcuggcggcagcGCGgccgcGCUCGGCACGcGCUu -3'
miRNA:   3'- -AGCCGC-----------UGCaa---CGAGCUGUGCcCGAu -5'
26040 5' -57.7 NC_005342.2 + 5213 0.66 0.520428
Target:  5'- uUCGGCGAUGaaGC-CGGC-CGGGUc- -3'
miRNA:   3'- -AGCCGCUGCaaCGaGCUGuGCCCGau -5'
26040 5' -57.7 NC_005342.2 + 4628 0.66 0.50997
Target:  5'- aUGGCGACGggcagGC-CGGCgcGCGGGUc- -3'
miRNA:   3'- aGCCGCUGCaa---CGaGCUG--UGCCCGau -5'
26040 5' -57.7 NC_005342.2 + 16930 0.66 0.50997
Target:  5'- -gGGCGcCG-UGCUCGGCGuCGGcGCa- -3'
miRNA:   3'- agCCGCuGCaACGAGCUGU-GCC-CGau -5'
26040 5' -57.7 NC_005342.2 + 45235 0.66 0.507889
Target:  5'- aCGGCGGCcgcaaucucgGC-CGugACGGGCa- -3'
miRNA:   3'- aGCCGCUGcaa-------CGaGCugUGCCCGau -5'
26040 5' -57.7 NC_005342.2 + 5558 0.67 0.499601
Target:  5'- gUCGGcCGGCGUggaGacgaUCGGCgcuguuGCGGGCUGc -3'
miRNA:   3'- -AGCC-GCUGCAa--Cg---AGCUG------UGCCCGAU- -5'
26040 5' -57.7 NC_005342.2 + 4014 0.67 0.486263
Target:  5'- uUCGGCacGACGUUGCcguauucccacaggUCGGCGgucgccaugcCGGGCa- -3'
miRNA:   3'- -AGCCG--CUGCAACG--------------AGCUGU----------GCCCGau -5'
26040 5' -57.7 NC_005342.2 + 45647 0.67 0.483209
Target:  5'- aCGGcCGcACGgUGCUCGcguuccgccaguucaACGCGGGCg- -3'
miRNA:   3'- aGCC-GC-UGCaACGAGC---------------UGUGCCCGau -5'
26040 5' -57.7 NC_005342.2 + 20939 0.67 0.480165
Target:  5'- cCGGCGgcuacgccACGggGCggacgcaaacgcgcgCGGCGCGGGCg- -3'
miRNA:   3'- aGCCGC--------UGCaaCGa--------------GCUGUGCCCGau -5'
26040 5' -57.7 NC_005342.2 + 23693 0.67 0.479151
Target:  5'- cCGGCGgaaaaccgaGCGauugGCUCG-CGCGGGUUGc -3'
miRNA:   3'- aGCCGC---------UGCaa--CGAGCuGUGCCCGAU- -5'
26040 5' -57.7 NC_005342.2 + 45693 0.67 0.469082
Target:  5'- -aGGCGugGUgucccggccUGCcacUCGGCGCcgaGGGCUGg -3'
miRNA:   3'- agCCGCugCA---------ACG---AGCUGUG---CCCGAU- -5'
26040 5' -57.7 NC_005342.2 + 34113 0.67 0.466082
Target:  5'- uUCGcGCGGCGcggcgcgcucaaugcGCUCGACGCGGcGCc- -3'
miRNA:   3'- -AGC-CGCUGCaa-------------CGAGCUGUGCC-CGau -5'
26040 5' -57.7 NC_005342.2 + 19490 0.67 0.459121
Target:  5'- aUCGGCGcuggcgcgcugGCGgcGCUCGugGCcguauGGGCa- -3'
miRNA:   3'- -AGCCGC-----------UGCaaCGAGCugUG-----CCCGau -5'
26040 5' -57.7 NC_005342.2 + 35838 0.67 0.449275
Target:  5'- gUUGGCGACGgccUGCgCGAC-CGGcGCa- -3'
miRNA:   3'- -AGCCGCUGCa--ACGaGCUGuGCC-CGau -5'
26040 5' -57.7 NC_005342.2 + 16883 0.67 0.449275
Target:  5'- gCGGCuGCGUcGCUCGGCAgCGGuCUGa -3'
miRNA:   3'- aGCCGcUGCAaCGAGCUGU-GCCcGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.