miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26040 5' -57.7 NC_005342.2 + 39577 1.07 0.000689
Target:  5'- aUCGGCGACGUUGCUCGACACGGGCUAc -3'
miRNA:   3'- -AGCCGCUGCAACGAGCUGUGCCCGAU- -5'
26040 5' -57.7 NC_005342.2 + 39452 0.76 0.122362
Target:  5'- cCGGUcGCGcUGUUCGGCACGGGCg- -3'
miRNA:   3'- aGCCGcUGCaACGAGCUGUGCCCGau -5'
26040 5' -57.7 NC_005342.2 + 41143 0.76 0.129367
Target:  5'- aUCGaacaGGCGcUGCUCGACGCGGGCg- -3'
miRNA:   3'- -AGCcg--CUGCaACGAGCUGUGCCCGau -5'
26040 5' -57.7 NC_005342.2 + 13805 0.76 0.133008
Target:  5'- aCGGCGACG--GUUCGGCgACGGGCg- -3'
miRNA:   3'- aGCCGCUGCaaCGAGCUG-UGCCCGau -5'
26040 5' -57.7 NC_005342.2 + 795 0.74 0.17873
Target:  5'- gCGGCGACGUagcugcggucgccUgcgcgucGCUCGGCGCGGGUg- -3'
miRNA:   3'- aGCCGCUGCA-------------A-------CGAGCUGUGCCCGau -5'
26040 5' -57.7 NC_005342.2 + 22944 0.74 0.184596
Target:  5'- cCGGCGcacuCGUUGCgaucagCGugACGGGCg- -3'
miRNA:   3'- aGCCGCu---GCAACGa-----GCugUGCCCGau -5'
26040 5' -57.7 NC_005342.2 + 10019 0.73 0.194749
Target:  5'- gCGGCG-CGcUUGCUCGACuCGGGgUAu -3'
miRNA:   3'- aGCCGCuGC-AACGAGCUGuGCCCgAU- -5'
26040 5' -57.7 NC_005342.2 + 19212 0.73 0.205388
Target:  5'- gCGGCGuuccgcACGgcGCUCGAgcaaUACGGGCUGg -3'
miRNA:   3'- aGCCGC------UGCaaCGAGCU----GUGCCCGAU- -5'
26040 5' -57.7 NC_005342.2 + 8606 0.72 0.240356
Target:  5'- aUGcGCGACGUcgaGCUCGGCGCGGcGCc- -3'
miRNA:   3'- aGC-CGCUGCAa--CGAGCUGUGCC-CGau -5'
26040 5' -57.7 NC_005342.2 + 22194 0.71 0.273173
Target:  5'- uUCGGCGgcuGCGgccUGCUCGAUgccgagACGGGCc- -3'
miRNA:   3'- -AGCCGC---UGCa--ACGAGCUG------UGCCCGau -5'
26040 5' -57.7 NC_005342.2 + 41384 0.71 0.280859
Target:  5'- cCGGCaaggagaauauccuCG-UGCUCGACGCGGGCg- -3'
miRNA:   3'- aGCCGcu------------GCaACGAGCUGUGCCCGau -5'
26040 5' -57.7 NC_005342.2 + 43117 0.7 0.30949
Target:  5'- gCGGCGGCaGcgGCaUCGGCACGGcGCg- -3'
miRNA:   3'- aGCCGCUG-CaaCG-AGCUGUGCC-CGau -5'
26040 5' -57.7 NC_005342.2 + 13857 0.7 0.30949
Target:  5'- cCGcGCGAaGUcgGC-CGGCACGGGCUGc -3'
miRNA:   3'- aGC-CGCUgCAa-CGaGCUGUGCCCGAU- -5'
26040 5' -57.7 NC_005342.2 + 42818 0.7 0.317181
Target:  5'- -aGGCGcaagcuGCGcUGCUCGACaacACGGGCg- -3'
miRNA:   3'- agCCGC------UGCaACGAGCUG---UGCCCGau -5'
26040 5' -57.7 NC_005342.2 + 14017 0.7 0.317181
Target:  5'- cCGGCGGCGacaaugUGCgaauucaaGAUACGGGCg- -3'
miRNA:   3'- aGCCGCUGCa-----ACGag------CUGUGCCCGau -5'
26040 5' -57.7 NC_005342.2 + 41389 0.7 0.325014
Target:  5'- -gGGCGGCGcgccgugGCggCGAUGCGGGCUu -3'
miRNA:   3'- agCCGCUGCaa-----CGa-GCUGUGCCCGAu -5'
26040 5' -57.7 NC_005342.2 + 32103 0.7 0.34111
Target:  5'- aUGGCGgucACGgcgGCUCGcuCGCGGGCUc -3'
miRNA:   3'- aGCCGC---UGCaa-CGAGCu-GUGCCCGAu -5'
26040 5' -57.7 NC_005342.2 + 896 0.7 0.34111
Target:  5'- uUCGuGCGGCGuUUGCgcuuuggCGGCuCGGGCUc -3'
miRNA:   3'- -AGC-CGCUGC-AACGa------GCUGuGCCCGAu -5'
26040 5' -57.7 NC_005342.2 + 446 0.69 0.349372
Target:  5'- gCGGCGAUG-UGCUUGGCACagucggccgGGGUg- -3'
miRNA:   3'- aGCCGCUGCaACGAGCUGUG---------CCCGau -5'
26040 5' -57.7 NC_005342.2 + 36563 0.69 0.357775
Target:  5'- -aGGCGACG-UGCUgCGGCauuucaucGCGGGCc- -3'
miRNA:   3'- agCCGCUGCaACGA-GCUG--------UGCCCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.