miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26040 5' -57.7 NC_005342.2 + 446 0.69 0.349372
Target:  5'- gCGGCGAUG-UGCUUGGCACagucggccgGGGUg- -3'
miRNA:   3'- aGCCGCUGCaACGAGCUGUG---------CCCGau -5'
26040 5' -57.7 NC_005342.2 + 795 0.74 0.17873
Target:  5'- gCGGCGACGUagcugcggucgccUgcgcgucGCUCGGCGCGGGUg- -3'
miRNA:   3'- aGCCGCUGCA-------------A-------CGAGCUGUGCCCGau -5'
26040 5' -57.7 NC_005342.2 + 896 0.7 0.34111
Target:  5'- uUCGuGCGGCGuUUGCgcuuuggCGGCuCGGGCUc -3'
miRNA:   3'- -AGC-CGCUGC-AACGa------GCUGuGCCCGAu -5'
26040 5' -57.7 NC_005342.2 + 2696 0.68 0.439546
Target:  5'- gUCGGCGAgGUUGUUCGugcccguCACGGcCg- -3'
miRNA:   3'- -AGCCGCUgCAACGAGCu------GUGCCcGau -5'
26040 5' -57.7 NC_005342.2 + 4014 0.67 0.486263
Target:  5'- uUCGGCacGACGUUGCcguauucccacaggUCGGCGgucgccaugcCGGGCa- -3'
miRNA:   3'- -AGCCG--CUGCAACG--------------AGCUGU----------GCCCGau -5'
26040 5' -57.7 NC_005342.2 + 4628 0.66 0.50997
Target:  5'- aUGGCGACGggcagGC-CGGCgcGCGGGUc- -3'
miRNA:   3'- aGCCGCUGCaa---CGaGCUG--UGCCCGau -5'
26040 5' -57.7 NC_005342.2 + 5198 0.66 0.530969
Target:  5'- gUCGGUGuCGUagaaCUCGACauGCGGGCc- -3'
miRNA:   3'- -AGCCGCuGCAac--GAGCUG--UGCCCGau -5'
26040 5' -57.7 NC_005342.2 + 5213 0.66 0.520428
Target:  5'- uUCGGCGAUGaaGC-CGGC-CGGGUc- -3'
miRNA:   3'- -AGCCGCUGCaaCGaGCUGuGCCCGau -5'
26040 5' -57.7 NC_005342.2 + 5520 0.69 0.383823
Target:  5'- cCGGCGACG--GCUUGGCGCGaGuGCa- -3'
miRNA:   3'- aGCCGCUGCaaCGAGCUGUGC-C-CGau -5'
26040 5' -57.7 NC_005342.2 + 5558 0.67 0.499601
Target:  5'- gUCGGcCGGCGUggaGacgaUCGGCgcuguuGCGGGCUGc -3'
miRNA:   3'- -AGCC-GCUGCAa--Cg---AGCUG------UGCCCGAU- -5'
26040 5' -57.7 NC_005342.2 + 8606 0.72 0.240356
Target:  5'- aUGcGCGACGUcgaGCUCGGCGCGGcGCc- -3'
miRNA:   3'- aGC-CGCUGCAa--CGAGCUGUGCC-CGau -5'
26040 5' -57.7 NC_005342.2 + 10019 0.73 0.194749
Target:  5'- gCGGCG-CGcUUGCUCGACuCGGGgUAu -3'
miRNA:   3'- aGCCGCuGC-AACGAGCUGuGCCCgAU- -5'
26040 5' -57.7 NC_005342.2 + 10234 0.68 0.420455
Target:  5'- gUCGGCGcACuGgaaGCcgagCGACGCGGGCa- -3'
miRNA:   3'- -AGCCGC-UG-Caa-CGa---GCUGUGCCCGau -5'
26040 5' -57.7 NC_005342.2 + 13805 0.76 0.133008
Target:  5'- aCGGCGACG--GUUCGGCgACGGGCg- -3'
miRNA:   3'- aGCCGCUGCaaCGAGCUG-UGCCCGau -5'
26040 5' -57.7 NC_005342.2 + 13857 0.7 0.30949
Target:  5'- cCGcGCGAaGUcgGC-CGGCACGGGCUGc -3'
miRNA:   3'- aGC-CGCUgCAa-CGaGCUGUGCCCGAU- -5'
26040 5' -57.7 NC_005342.2 + 14017 0.7 0.317181
Target:  5'- cCGGCGGCGacaaugUGCgaauucaaGAUACGGGCg- -3'
miRNA:   3'- aGCCGCUGCa-----ACGag------CUGUGCCCGau -5'
26040 5' -57.7 NC_005342.2 + 15488 0.66 0.552274
Target:  5'- cCGGCGGCGcgucaaGCgCGAUguuaGCGGGCa- -3'
miRNA:   3'- aGCCGCUGCaa----CGaGCUG----UGCCCGau -5'
26040 5' -57.7 NC_005342.2 + 16883 0.67 0.449275
Target:  5'- gCGGCuGCGUcGCUCGGCAgCGGuCUGa -3'
miRNA:   3'- aGCCGcUGCAaCGAGCUGU-GCCcGAU- -5'
26040 5' -57.7 NC_005342.2 + 16930 0.66 0.50997
Target:  5'- -gGGCGcCG-UGCUCGGCGuCGGcGCa- -3'
miRNA:   3'- agCCGCuGCaACGAGCUGU-GCC-CGau -5'
26040 5' -57.7 NC_005342.2 + 17102 0.68 0.439546
Target:  5'- gCGGCGACGc-GUUCG-C-CGGGCUc -3'
miRNA:   3'- aGCCGCUGCaaCGAGCuGuGCCCGAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.