miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26041 5' -53.7 NC_005342.2 + 23117 0.66 0.766476
Target:  5'- cAGCGGCGcuaauGuUGcgCGCGGACUgGAc -3'
miRNA:   3'- -UUGCCGUu----CuACuaGCGCCUGAgCUc -5'
26041 5' -53.7 NC_005342.2 + 8198 0.66 0.766476
Target:  5'- -gUGGCAGGAUGA-CGCcGGCccgcgCGAGg -3'
miRNA:   3'- uuGCCGUUCUACUaGCGcCUGa----GCUC- -5'
26041 5' -53.7 NC_005342.2 + 38775 0.66 0.745331
Target:  5'- gGACGGCGAGua---CGCGcGACUCGuGc -3'
miRNA:   3'- -UUGCCGUUCuacuaGCGC-CUGAGCuC- -5'
26041 5' -53.7 NC_005342.2 + 43175 0.66 0.745331
Target:  5'- aGGCGGCGu-AUGAgcgucacgcgUCGCGGGCUCa-- -3'
miRNA:   3'- -UUGCCGUucUACU----------AGCGCCUGAGcuc -5'
26041 5' -53.7 NC_005342.2 + 6727 0.66 0.734571
Target:  5'- cACGGCGccccGGUCGCGcGcCUCGAGg -3'
miRNA:   3'- uUGCCGUucuaCUAGCGC-CuGAGCUC- -5'
26041 5' -53.7 NC_005342.2 + 30353 0.67 0.701689
Target:  5'- cGCGGCAAGg----CGCGGcgugcgcuGCUCGAGc -3'
miRNA:   3'- uUGCCGUUCuacuaGCGCC--------UGAGCUC- -5'
26041 5' -53.7 NC_005342.2 + 37817 0.67 0.689454
Target:  5'- cGACGGCuGAGGUGAacccguaUCGCGGuCgCGAa -3'
miRNA:   3'- -UUGCCG-UUCUACU-------AGCGCCuGaGCUc -5'
26041 5' -53.7 NC_005342.2 + 32550 0.67 0.656902
Target:  5'- cACGuGCAAcAUGAgCGCGGccuGCUCGAGu -3'
miRNA:   3'- uUGC-CGUUcUACUaGCGCC---UGAGCUC- -5'
26041 5' -53.7 NC_005342.2 + 41308 0.7 0.53372
Target:  5'- aAGCGGC-GGAUGcgCGCcuGCUCGAGc -3'
miRNA:   3'- -UUGCCGuUCUACuaGCGccUGAGCUC- -5'
26041 5' -53.7 NC_005342.2 + 40580 0.73 0.346619
Target:  5'- -cCGGC--GAUGGUCGCGcGACUCGGu -3'
miRNA:   3'- uuGCCGuuCUACUAGCGC-CUGAGCUc -5'
26041 5' -53.7 NC_005342.2 + 39256 1.06 0.001966
Target:  5'- cAACGGCAAGAUGAUCGCGGACUCGAGc -3'
miRNA:   3'- -UUGCCGUUCUACUAGCGCCUGAGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.