Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26042 | 5' | -51.4 | NC_005342.2 | + | 31299 | 0.66 | 0.861962 |
Target: 5'- uGCGGCggugcuuccgcaccgCGCGGUGCagc-ACCGGGCAGg -3' miRNA: 3'- -CGUCG---------------GCGCUAUGgaauUGGUCUGUU- -5' |
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26042 | 5' | -51.4 | NC_005342.2 | + | 36073 | 0.66 | 0.858497 |
Target: 5'- cGCcGCUGCGcAUGCCgg-GCCGcGACGAc -3' miRNA: 3'- -CGuCGGCGC-UAUGGaauUGGU-CUGUU- -5' |
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26042 | 5' | -51.4 | NC_005342.2 | + | 22511 | 0.66 | 0.858497 |
Target: 5'- gGguGUCGUGGUgACCggcacGCCAGGCGu -3' miRNA: 3'- -CguCGGCGCUA-UGGaau--UGGUCUGUu -5' |
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26042 | 5' | -51.4 | NC_005342.2 | + | 20442 | 0.66 | 0.858497 |
Target: 5'- gGCGG-CGCGAaGCCUgcGCCGGuCGu -3' miRNA: 3'- -CGUCgGCGCUaUGGAauUGGUCuGUu -5' |
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26042 | 5' | -51.4 | NC_005342.2 | + | 31123 | 0.66 | 0.849652 |
Target: 5'- aCAGUCGCccgucGAUcGCCUUGGCCGcGACGc -3' miRNA: 3'- cGUCGGCG-----CUA-UGGAAUUGGU-CUGUu -5' |
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26042 | 5' | -51.4 | NC_005342.2 | + | 44767 | 0.66 | 0.840554 |
Target: 5'- cGCAGacgcugaacaCCGCGcgGCCgcgcCCGGGCAAg -3' miRNA: 3'- -CGUC----------GGCGCuaUGGaauuGGUCUGUU- -5' |
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26042 | 5' | -51.4 | NC_005342.2 | + | 42004 | 0.66 | 0.840554 |
Target: 5'- cCGGCCGCaaGGUGCC--GACCgAGGCGu -3' miRNA: 3'- cGUCGGCG--CUAUGGaaUUGG-UCUGUu -5' |
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26042 | 5' | -51.4 | NC_005342.2 | + | 6650 | 0.66 | 0.840554 |
Target: 5'- -gGGCCGCaGUGCa---ACCAGGCAGu -3' miRNA: 3'- cgUCGGCGcUAUGgaauUGGUCUGUU- -5' |
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26042 | 5' | -51.4 | NC_005342.2 | + | 23021 | 0.66 | 0.831213 |
Target: 5'- uGCGGCUGCGG---CUUcuCCGGGCAGg -3' miRNA: 3'- -CGUCGGCGCUaugGAAuuGGUCUGUU- -5' |
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26042 | 5' | -51.4 | NC_005342.2 | + | 16371 | 0.66 | 0.82164 |
Target: 5'- gGCuuGCCGCGAUucaGCag-AugCAGGCAAa -3' miRNA: 3'- -CGu-CGGCGCUA---UGgaaUugGUCUGUU- -5' |
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26042 | 5' | -51.4 | NC_005342.2 | + | 22972 | 0.67 | 0.811847 |
Target: 5'- gGCAGCguCGCGGUACCggucGCCgAGAgCAGg -3' miRNA: 3'- -CGUCG--GCGCUAUGGaau-UGG-UCU-GUU- -5' |
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26042 | 5' | -51.4 | NC_005342.2 | + | 4046 | 0.67 | 0.801844 |
Target: 5'- gGCGGUCGCcAUGCCgggcAGCCGGAa-- -3' miRNA: 3'- -CGUCGGCGcUAUGGaa--UUGGUCUguu -5' |
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26042 | 5' | -51.4 | NC_005342.2 | + | 39948 | 0.67 | 0.801844 |
Target: 5'- cGCGGCCGgccaacCGAUcgacgaauucgaACCUuucUGACUAGGCAAa -3' miRNA: 3'- -CGUCGGC------GCUA------------UGGA---AUUGGUCUGUU- -5' |
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26042 | 5' | -51.4 | NC_005342.2 | + | 18895 | 0.67 | 0.791645 |
Target: 5'- aGCAGCCGCGcgGCUgguacACCcucuggcugcaGGGCGAa -3' miRNA: 3'- -CGUCGGCGCuaUGGaau--UGG-----------UCUGUU- -5' |
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26042 | 5' | -51.4 | NC_005342.2 | + | 22197 | 0.67 | 0.791645 |
Target: 5'- gGCGGCUGCG--GCCUgcucgauGCCgAGACGGg -3' miRNA: 3'- -CGUCGGCGCuaUGGAau-----UGG-UCUGUU- -5' |
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26042 | 5' | -51.4 | NC_005342.2 | + | 19458 | 0.67 | 0.781261 |
Target: 5'- gGCAGCCGCGccGCCgcGACCcgcGCGGu -3' miRNA: 3'- -CGUCGGCGCuaUGGaaUUGGuc-UGUU- -5' |
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26042 | 5' | -51.4 | NC_005342.2 | + | 8860 | 0.68 | 0.715821 |
Target: 5'- uUAGCCGCGc-ACCUUGAUCuuGGCGAg -3' miRNA: 3'- cGUCGGCGCuaUGGAAUUGGu-CUGUU- -5' |
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26042 | 5' | -51.4 | NC_005342.2 | + | 6298 | 0.69 | 0.681683 |
Target: 5'- cGCAGCCGUGAggacgACCgc-ACCGcGCGAu -3' miRNA: 3'- -CGUCGGCGCUa----UGGaauUGGUcUGUU- -5' |
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26042 | 5' | -51.4 | NC_005342.2 | + | 33149 | 0.69 | 0.681683 |
Target: 5'- cGUAGCCGCGAguccgGCagcaUUGgcagcggcgcGCCGGGCGAu -3' miRNA: 3'- -CGUCGGCGCUa----UGg---AAU----------UGGUCUGUU- -5' |
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26042 | 5' | -51.4 | NC_005342.2 | + | 17616 | 0.69 | 0.658641 |
Target: 5'- cCGGCCGCGcccgGUGCCgUGGCC-GACAc -3' miRNA: 3'- cGUCGGCGC----UAUGGaAUUGGuCUGUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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