miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26042 5' -51.4 NC_005342.2 + 39125 1.09 0.001685
Target:  5'- cGCAGCCGCGAUACCUUAACCAGACAAg -3'
miRNA:   3'- -CGUCGGCGCUAUGGAAUUGGUCUGUU- -5'
26042 5' -51.4 NC_005342.2 + 25561 0.74 0.386792
Target:  5'- uGC-GCCGCGAaGCCUcGACCuGGCAGa -3'
miRNA:   3'- -CGuCGGCGCUaUGGAaUUGGuCUGUU- -5'
26042 5' -51.4 NC_005342.2 + 32177 0.73 0.435868
Target:  5'- aGC-GCCGCGAcgaGCCgcagcaugUAACCGGACAAc -3'
miRNA:   3'- -CGuCGGCGCUa--UGGa-------AUUGGUCUGUU- -5'
26042 5' -51.4 NC_005342.2 + 34867 0.73 0.466982
Target:  5'- cGCAGCuCGCGAUGCCgu-ACaucGACAAc -3'
miRNA:   3'- -CGUCG-GCGCUAUGGaauUGgu-CUGUU- -5'
26042 5' -51.4 NC_005342.2 + 17135 0.71 0.566305
Target:  5'- aGCAGCuCGCGccGCUgacgGGCCAGGCGc -3'
miRNA:   3'- -CGUCG-GCGCuaUGGaa--UUGGUCUGUu -5'
26042 5' -51.4 NC_005342.2 + 17016 0.71 0.589235
Target:  5'- cGCGGCCGuCGcgACCggcaUGACCAaccGGCAAa -3'
miRNA:   3'- -CGUCGGC-GCuaUGGa---AUUGGU---CUGUU- -5'
26042 5' -51.4 NC_005342.2 + 382 0.7 0.600765
Target:  5'- -gAGCgCGCGAU-CCUUGAUCaAGACAGg -3'
miRNA:   3'- cgUCG-GCGCUAuGGAAUUGG-UCUGUU- -5'
26042 5' -51.4 NC_005342.2 + 29688 0.7 0.612325
Target:  5'- cGCGGCCGCGcUGCC---GCCAG-CGc -3'
miRNA:   3'- -CGUCGGCGCuAUGGaauUGGUCuGUu -5'
26042 5' -51.4 NC_005342.2 + 17616 0.69 0.658641
Target:  5'- cCGGCCGCGcccgGUGCCgUGGCC-GACAc -3'
miRNA:   3'- cGUCGGCGC----UAUGGaAUUGGuCUGUu -5'
26042 5' -51.4 NC_005342.2 + 6298 0.69 0.681683
Target:  5'- cGCAGCCGUGAggacgACCgc-ACCGcGCGAu -3'
miRNA:   3'- -CGUCGGCGCUa----UGGaauUGGUcUGUU- -5'
26042 5' -51.4 NC_005342.2 + 33149 0.69 0.681683
Target:  5'- cGUAGCCGCGAguccgGCagcaUUGgcagcggcgcGCCGGGCGAu -3'
miRNA:   3'- -CGUCGGCGCUa----UGg---AAU----------UGGUCUGUU- -5'
26042 5' -51.4 NC_005342.2 + 8860 0.68 0.715821
Target:  5'- uUAGCCGCGc-ACCUUGAUCuuGGCGAg -3'
miRNA:   3'- cGUCGGCGCuaUGGAAUUGGu-CUGUU- -5'
26042 5' -51.4 NC_005342.2 + 19458 0.67 0.781261
Target:  5'- gGCAGCCGCGccGCCgcGACCcgcGCGGu -3'
miRNA:   3'- -CGUCGGCGCuaUGGaaUUGGuc-UGUU- -5'
26042 5' -51.4 NC_005342.2 + 18895 0.67 0.791645
Target:  5'- aGCAGCCGCGcgGCUgguacACCcucuggcugcaGGGCGAa -3'
miRNA:   3'- -CGUCGGCGCuaUGGaau--UGG-----------UCUGUU- -5'
26042 5' -51.4 NC_005342.2 + 22197 0.67 0.791645
Target:  5'- gGCGGCUGCG--GCCUgcucgauGCCgAGACGGg -3'
miRNA:   3'- -CGUCGGCGCuaUGGAau-----UGG-UCUGUU- -5'
26042 5' -51.4 NC_005342.2 + 4046 0.67 0.801844
Target:  5'- gGCGGUCGCcAUGCCgggcAGCCGGAa-- -3'
miRNA:   3'- -CGUCGGCGcUAUGGaa--UUGGUCUguu -5'
26042 5' -51.4 NC_005342.2 + 39948 0.67 0.801844
Target:  5'- cGCGGCCGgccaacCGAUcgacgaauucgaACCUuucUGACUAGGCAAa -3'
miRNA:   3'- -CGUCGGC------GCUA------------UGGA---AUUGGUCUGUU- -5'
26042 5' -51.4 NC_005342.2 + 22972 0.67 0.811847
Target:  5'- gGCAGCguCGCGGUACCggucGCCgAGAgCAGg -3'
miRNA:   3'- -CGUCG--GCGCUAUGGaau-UGG-UCU-GUU- -5'
26042 5' -51.4 NC_005342.2 + 16371 0.66 0.82164
Target:  5'- gGCuuGCCGCGAUucaGCag-AugCAGGCAAa -3'
miRNA:   3'- -CGu-CGGCGCUA---UGgaaUugGUCUGUU- -5'
26042 5' -51.4 NC_005342.2 + 23021 0.66 0.831213
Target:  5'- uGCGGCUGCGG---CUUcuCCGGGCAGg -3'
miRNA:   3'- -CGUCGGCGCUaugGAAuuGGUCUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.