Results 1 - 20 of 115 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26043 | 5' | -55.2 | NC_005342.2 | + | 45275 | 0.66 | 0.742373 |
Target: 5'- uGCGAauacUCGGCGCUcauggcgcucgaccaGCCcgGUCGCGAGa- -3' miRNA: 3'- gCGCU----AGCUGUGA---------------CGG--CAGCGCUUgc -5' |
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26043 | 5' | -55.2 | NC_005342.2 | + | 29113 | 0.66 | 0.738203 |
Target: 5'- uGCGcaCGGCaacugcguACUGCCG-CGCGGGCu -3' miRNA: 3'- gCGCuaGCUG--------UGACGGCaGCGCUUGc -5' |
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26043 | 5' | -55.2 | NC_005342.2 | + | 2642 | 0.66 | 0.738203 |
Target: 5'- gGCGAcacCGGCAgcCUGCagCGUCGCGccGGCGg -3' miRNA: 3'- gCGCUa--GCUGU--GACG--GCAGCGC--UUGC- -5' |
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26043 | 5' | -55.2 | NC_005342.2 | + | 14067 | 0.66 | 0.738203 |
Target: 5'- gCGCGAucgucauaccgUCGACGCUaUCGUCGUGGc-- -3' miRNA: 3'- -GCGCU-----------AGCUGUGAcGGCAGCGCUugc -5' |
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26043 | 5' | -55.2 | NC_005342.2 | + | 5309 | 0.66 | 0.738203 |
Target: 5'- gCGCugGAUCGuCAC-GCCGcCGUGGAUGc -3' miRNA: 3'- -GCG--CUAGCuGUGaCGGCaGCGCUUGC- -5' |
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26043 | 5' | -55.2 | NC_005342.2 | + | 27444 | 0.66 | 0.738203 |
Target: 5'- aGCGAaCGGCGCggcggcgGCCGgcaGCGGuugcGCGg -3' miRNA: 3'- gCGCUaGCUGUGa------CGGCag-CGCU----UGC- -5' |
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26043 | 5' | -55.2 | NC_005342.2 | + | 44380 | 0.66 | 0.727705 |
Target: 5'- aCGCGcgCGGCAUUGgUGUCGaCGu-CGa -3' miRNA: 3'- -GCGCuaGCUGUGACgGCAGC-GCuuGC- -5' |
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26043 | 5' | -55.2 | NC_005342.2 | + | 32812 | 0.66 | 0.727705 |
Target: 5'- aCGCGAccuaCG-CACUGCCGcUCGCucGCc -3' miRNA: 3'- -GCGCUa---GCuGUGACGGC-AGCGcuUGc -5' |
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26043 | 5' | -55.2 | NC_005342.2 | + | 18259 | 0.66 | 0.727705 |
Target: 5'- uCGCauUCGGCGCUGgCGgcagCGCGGccGCGc -3' miRNA: 3'- -GCGcuAGCUGUGACgGCa---GCGCU--UGC- -5' |
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26043 | 5' | -55.2 | NC_005342.2 | + | 20529 | 0.66 | 0.727705 |
Target: 5'- gCGCcuGGUCGACA--GCCGUCGCc-GCGc -3' miRNA: 3'- -GCG--CUAGCUGUgaCGGCAGCGcuUGC- -5' |
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26043 | 5' | -55.2 | NC_005342.2 | + | 2770 | 0.66 | 0.727705 |
Target: 5'- aGCGAUUG-CGCaGCgCGUCGUaGGCGa -3' miRNA: 3'- gCGCUAGCuGUGaCG-GCAGCGcUUGC- -5' |
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26043 | 5' | -55.2 | NC_005342.2 | + | 47154 | 0.66 | 0.727705 |
Target: 5'- aCGCGcaggCGACcgcaGCUacgucGCCGcUCGCGGGCGc -3' miRNA: 3'- -GCGCua--GCUG----UGA-----CGGC-AGCGCUUGC- -5' |
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26043 | 5' | -55.2 | NC_005342.2 | + | 36140 | 0.66 | 0.725594 |
Target: 5'- aGCGAUguacCGGCGCaagcuggagcgcGCCGUCGCGcuGAUGg -3' miRNA: 3'- gCGCUA----GCUGUGa-----------CGGCAGCGC--UUGC- -5' |
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26043 | 5' | -55.2 | NC_005342.2 | + | 6609 | 0.66 | 0.725594 |
Target: 5'- cCGCGccCGACAauCUGCCGccagagcacgaGCGAGCGc -3' miRNA: 3'- -GCGCuaGCUGU--GACGGCag---------CGCUUGC- -5' |
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26043 | 5' | -55.2 | NC_005342.2 | + | 44299 | 0.66 | 0.716049 |
Target: 5'- aCGCGAUggucggcgugUGGgagagcaccgugcCGCUGCCGccgCGCGAGCa -3' miRNA: 3'- -GCGCUA----------GCU-------------GUGACGGCa--GCGCUUGc -5' |
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26043 | 5' | -55.2 | NC_005342.2 | + | 38267 | 0.66 | 0.706437 |
Target: 5'- aCGCGcucaCGGCaacgacacaGCUGCUGuUCGCGGGCa -3' miRNA: 3'- -GCGCua--GCUG---------UGACGGC-AGCGCUUGc -5' |
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26043 | 5' | -55.2 | NC_005342.2 | + | 5572 | 0.66 | 0.706437 |
Target: 5'- aGaCGAUCGGCGCUGU---UGCGGGCu -3' miRNA: 3'- gC-GCUAGCUGUGACGgcaGCGCUUGc -5' |
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26043 | 5' | -55.2 | NC_005342.2 | + | 16901 | 0.66 | 0.706437 |
Target: 5'- aGCGGUCuGAUgaaGCUgGCCGgcaUUGCGGGCGc -3' miRNA: 3'- gCGCUAG-CUG---UGA-CGGC---AGCGCUUGC- -5' |
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26043 | 5' | -55.2 | NC_005342.2 | + | 10876 | 0.66 | 0.706437 |
Target: 5'- cCGCG--CGACGCggUGCaCGUCGCGuAGCc -3' miRNA: 3'- -GCGCuaGCUGUG--ACG-GCAGCGC-UUGc -5' |
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26043 | 5' | -55.2 | NC_005342.2 | + | 30627 | 0.66 | 0.69569 |
Target: 5'- aGCGcGUCGACGCUcGCCuucaUCGC-AACGa -3' miRNA: 3'- gCGC-UAGCUGUGA-CGGc---AGCGcUUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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