miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26043 5' -55.2 NC_005342.2 + 29113 0.66 0.738203
Target:  5'- uGCGcaCGGCaacugcguACUGCCG-CGCGGGCu -3'
miRNA:   3'- gCGCuaGCUG--------UGACGGCaGCGCUUGc -5'
26043 5' -55.2 NC_005342.2 + 10102 0.66 0.69569
Target:  5'- gGCccaGGUCGGCAUaGCCGaccacuUCGCGAccGCGa -3'
miRNA:   3'- gCG---CUAGCUGUGaCGGC------AGCGCU--UGC- -5'
26043 5' -55.2 NC_005342.2 + 38267 0.66 0.706437
Target:  5'- aCGCGcucaCGGCaacgacacaGCUGCUGuUCGCGGGCa -3'
miRNA:   3'- -GCGCua--GCUG---------UGACGGC-AGCGCUUGc -5'
26043 5' -55.2 NC_005342.2 + 45275 0.66 0.742373
Target:  5'- uGCGAauacUCGGCGCUcauggcgcucgaccaGCCcgGUCGCGAGa- -3'
miRNA:   3'- gCGCU----AGCUGUGA---------------CGG--CAGCGCUUgc -5'
26043 5' -55.2 NC_005342.2 + 30627 0.66 0.69569
Target:  5'- aGCGcGUCGACGCUcGCCuucaUCGC-AACGa -3'
miRNA:   3'- gCGC-UAGCUGUGA-CGGc---AGCGcUUGC- -5'
26043 5' -55.2 NC_005342.2 + 30828 0.66 0.69569
Target:  5'- aGCGGcgCGA-GCUGCUGcUCGCGcGCGa -3'
miRNA:   3'- gCGCUa-GCUgUGACGGC-AGCGCuUGC- -5'
26043 5' -55.2 NC_005342.2 + 31924 0.66 0.69569
Target:  5'- gCGCGAUgaGCACUcGCCGagcgucuugagcUCGCGGAUa -3'
miRNA:   3'- -GCGCUAgcUGUGA-CGGC------------AGCGCUUGc -5'
26043 5' -55.2 NC_005342.2 + 2464 0.66 0.69569
Target:  5'- uGaCGAUCGACGCcGCCucgagGUCGgGcGCGa -3'
miRNA:   3'- gC-GCUAGCUGUGaCGG-----CAGCgCuUGC- -5'
26043 5' -55.2 NC_005342.2 + 8916 0.66 0.69569
Target:  5'- uCGCGc-CGGCGCUGuCCaUCGCGuGCGc -3'
miRNA:   3'- -GCGCuaGCUGUGAC-GGcAGCGCuUGC- -5'
26043 5' -55.2 NC_005342.2 + 6083 0.66 0.69569
Target:  5'- uGCGAg-GACGCUGuuGcccucgggCGUGAGCGu -3'
miRNA:   3'- gCGCUagCUGUGACggCa-------GCGCUUGC- -5'
26043 5' -55.2 NC_005342.2 + 22633 0.66 0.69569
Target:  5'- aCGCGAcCGuuacguacguCGCgGCCGUCGCcGGCGu -3'
miRNA:   3'- -GCGCUaGCu---------GUGaCGGCAGCGcUUGC- -5'
26043 5' -55.2 NC_005342.2 + 5572 0.66 0.706437
Target:  5'- aGaCGAUCGGCGCUGU---UGCGGGCu -3'
miRNA:   3'- gC-GCUAGCUGUGACGgcaGCGCUUGc -5'
26043 5' -55.2 NC_005342.2 + 27444 0.66 0.738203
Target:  5'- aGCGAaCGGCGCggcggcgGCCGgcaGCGGuugcGCGg -3'
miRNA:   3'- gCGCUaGCUGUGa------CGGCag-CGCU----UGC- -5'
26043 5' -55.2 NC_005342.2 + 32812 0.66 0.727705
Target:  5'- aCGCGAccuaCG-CACUGCCGcUCGCucGCc -3'
miRNA:   3'- -GCGCUa---GCuGUGACGGC-AGCGcuUGc -5'
26043 5' -55.2 NC_005342.2 + 20529 0.66 0.727705
Target:  5'- gCGCcuGGUCGACA--GCCGUCGCc-GCGc -3'
miRNA:   3'- -GCG--CUAGCUGUgaCGGCAGCGcuUGC- -5'
26043 5' -55.2 NC_005342.2 + 18259 0.66 0.727705
Target:  5'- uCGCauUCGGCGCUGgCGgcagCGCGGccGCGc -3'
miRNA:   3'- -GCGcuAGCUGUGACgGCa---GCGCU--UGC- -5'
26043 5' -55.2 NC_005342.2 + 36140 0.66 0.725594
Target:  5'- aGCGAUguacCGGCGCaagcuggagcgcGCCGUCGCGcuGAUGg -3'
miRNA:   3'- gCGCUA----GCUGUGa-----------CGGCAGCGC--UUGC- -5'
26043 5' -55.2 NC_005342.2 + 6609 0.66 0.725594
Target:  5'- cCGCGccCGACAauCUGCCGccagagcacgaGCGAGCGc -3'
miRNA:   3'- -GCGCuaGCUGU--GACGGCag---------CGCUUGC- -5'
26043 5' -55.2 NC_005342.2 + 10876 0.66 0.706437
Target:  5'- cCGCG--CGACGCggUGCaCGUCGCGuAGCc -3'
miRNA:   3'- -GCGCuaGCUGUG--ACG-GCAGCGC-UUGc -5'
26043 5' -55.2 NC_005342.2 + 16901 0.66 0.706437
Target:  5'- aGCGGUCuGAUgaaGCUgGCCGgcaUUGCGGGCGc -3'
miRNA:   3'- gCGCUAG-CUG---UGA-CGGC---AGCGCUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.