miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26043 5' -55.2 NC_005342.2 + 490 0.72 0.38552
Target:  5'- gGCGcgCGACG-UGCCGgcgagCGUGAACGc -3'
miRNA:   3'- gCGCuaGCUGUgACGGCa----GCGCUUGC- -5'
26043 5' -55.2 NC_005342.2 + 672 0.74 0.281564
Target:  5'- gCGCGAUCG-UGCcGCCGccCGCGAGCGc -3'
miRNA:   3'- -GCGCUAGCuGUGaCGGCa-GCGCUUGC- -5'
26043 5' -55.2 NC_005342.2 + 789 0.71 0.451094
Target:  5'- cCGCGAgcggCGACguaGCUGCgGUCGCcuGCGc -3'
miRNA:   3'- -GCGCUa---GCUG---UGACGgCAGCGcuUGC- -5'
26043 5' -55.2 NC_005342.2 + 1640 0.67 0.663126
Target:  5'- gCGCGGUCGgaaacaGCGCUuCCGUCGUGcaguACa -3'
miRNA:   3'- -GCGCUAGC------UGUGAcGGCAGCGCu---UGc -5'
26043 5' -55.2 NC_005342.2 + 2464 0.66 0.69569
Target:  5'- uGaCGAUCGACGCcGCCucgagGUCGgGcGCGa -3'
miRNA:   3'- gC-GCUAGCUGUGaCGG-----CAGCgCuUGC- -5'
26043 5' -55.2 NC_005342.2 + 2508 0.67 0.684882
Target:  5'- uCGCGAUCGGCACguucgcGCCGggCuCGAGa- -3'
miRNA:   3'- -GCGCUAGCUGUGa-----CGGCa-GcGCUUgc -5'
26043 5' -55.2 NC_005342.2 + 2642 0.66 0.738203
Target:  5'- gGCGAcacCGGCAgcCUGCagCGUCGCGccGGCGg -3'
miRNA:   3'- gCGCUa--GCUGU--GACG--GCAGCGC--UUGC- -5'
26043 5' -55.2 NC_005342.2 + 2770 0.66 0.727705
Target:  5'- aGCGAUUG-CGCaGCgCGUCGUaGGCGa -3'
miRNA:   3'- gCGCUAGCuGUGaCG-GCAGCGcUUGC- -5'
26043 5' -55.2 NC_005342.2 + 3832 0.67 0.6522
Target:  5'- aGCGAaccCGGCAa-GCCGUUguaGCGAGCGc -3'
miRNA:   3'- gCGCUa--GCUGUgaCGGCAG---CGCUUGC- -5'
26043 5' -55.2 NC_005342.2 + 5309 0.66 0.738203
Target:  5'- gCGCugGAUCGuCAC-GCCGcCGUGGAUGc -3'
miRNA:   3'- -GCG--CUAGCuGUGaCGGCaGCGCUUGC- -5'
26043 5' -55.2 NC_005342.2 + 5405 0.66 0.69569
Target:  5'- aGCGucGUCGGCAuCUGCgaaCGCGAACa -3'
miRNA:   3'- gCGC--UAGCUGU-GACGgcaGCGCUUGc -5'
26043 5' -55.2 NC_005342.2 + 5572 0.66 0.706437
Target:  5'- aGaCGAUCGGCGCUGU---UGCGGGCu -3'
miRNA:   3'- gC-GCUAGCUGUGACGgcaGCGCUUGc -5'
26043 5' -55.2 NC_005342.2 + 6083 0.66 0.69569
Target:  5'- uGCGAg-GACGCUGuuGcccucgggCGUGAGCGu -3'
miRNA:   3'- gCGCUagCUGUGACggCa-------GCGCUUGC- -5'
26043 5' -55.2 NC_005342.2 + 6609 0.66 0.725594
Target:  5'- cCGCGccCGACAauCUGCCGccagagcacgaGCGAGCGc -3'
miRNA:   3'- -GCGCuaGCUGU--GACGGCag---------CGCUUGC- -5'
26043 5' -55.2 NC_005342.2 + 7303 0.77 0.195841
Target:  5'- uGCGAcCGACugUGgCGUCGCGAAa- -3'
miRNA:   3'- gCGCUaGCUGugACgGCAGCGCUUgc -5'
26043 5' -55.2 NC_005342.2 + 7549 0.68 0.619352
Target:  5'- gGCGAUCGGguUgguguucuuUGCgGUCGCGAguGCGc -3'
miRNA:   3'- gCGCUAGCUguG---------ACGgCAGCGCU--UGC- -5'
26043 5' -55.2 NC_005342.2 + 8625 0.67 0.640161
Target:  5'- gCGCGGcgcccggcuugcUCGugACggUGCCGUCggcguucagcacgGCGAACGu -3'
miRNA:   3'- -GCGCU------------AGCugUG--ACGGCAG-------------CGCUUGC- -5'
26043 5' -55.2 NC_005342.2 + 8916 0.66 0.69569
Target:  5'- uCGCGc-CGGCGCUGuCCaUCGCGuGCGc -3'
miRNA:   3'- -GCGCuaGCUGUGAC-GGcAGCGCuUGC- -5'
26043 5' -55.2 NC_005342.2 + 9021 0.68 0.586602
Target:  5'- gGCGAccugCGACACgucgacGCCGaucugCGUGAGCGc -3'
miRNA:   3'- gCGCUa---GCUGUGa-----CGGCa----GCGCUUGC- -5'
26043 5' -55.2 NC_005342.2 + 9107 0.78 0.157819
Target:  5'- gGUGAUCGGCAagccgaUGCCGUCGCGcAUGu -3'
miRNA:   3'- gCGCUAGCUGUg-----ACGGCAGCGCuUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.