miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26043 5' -55.2 NC_005342.2 + 19486 0.77 0.175918
Target:  5'- uGCGAUCGGCGCUGgCG-CGCuGGCGg -3'
miRNA:   3'- gCGCUAGCUGUGACgGCaGCGcUUGC- -5'
26043 5' -55.2 NC_005342.2 + 22445 0.69 0.511861
Target:  5'- aCGCGAUggCGAC-CUGCCcgaggcUCGUGAACa -3'
miRNA:   3'- -GCGCUA--GCUGuGACGGc-----AGCGCUUGc -5'
26043 5' -55.2 NC_005342.2 + 44746 0.69 0.543498
Target:  5'- cCGCGcgUGGCGCUGgCGgCGCGcaGACGc -3'
miRNA:   3'- -GCGCuaGCUGUGACgGCaGCGC--UUGC- -5'
26043 5' -55.2 NC_005342.2 + 45275 0.66 0.742373
Target:  5'- uGCGAauacUCGGCGCUcauggcgcucgaccaGCCcgGUCGCGAGa- -3'
miRNA:   3'- gCGCU----AGCUGUGA---------------CGG--CAGCGCUUgc -5'
26043 5' -55.2 NC_005342.2 + 29541 0.73 0.317929
Target:  5'- gGCGAUCGGCGCgccGCCGgucgacuggucauUCGCG-GCGa -3'
miRNA:   3'- gCGCUAGCUGUGa--CGGC-------------AGCGCuUGC- -5'
26043 5' -55.2 NC_005342.2 + 47220 0.73 0.342703
Target:  5'- aCGCGccggCGGCgACUGCCG-CGCuGAACGa -3'
miRNA:   3'- -GCGCua--GCUG-UGACGGCaGCG-CUUGC- -5'
26043 5' -55.2 NC_005342.2 + 38077 0.72 0.367975
Target:  5'- -cUGAUCGACGC-GCUGUCGCGuguCGg -3'
miRNA:   3'- gcGCUAGCUGUGaCGGCAGCGCuu-GC- -5'
26043 5' -55.2 NC_005342.2 + 13859 0.72 0.393594
Target:  5'- gCGCGAagUCGGCcggcacgggcugcGCggcgGCCGUCGCGAuCGu -3'
miRNA:   3'- -GCGCU--AGCUG-------------UGa---CGGCAGCGCUuGC- -5'
26043 5' -55.2 NC_005342.2 + 29943 0.71 0.422226
Target:  5'- -uCGAUCGACGC-GCCGcgCGCGAucaGCGc -3'
miRNA:   3'- gcGCUAGCUGUGaCGGCa-GCGCU---UGC- -5'
26043 5' -55.2 NC_005342.2 + 28615 0.7 0.501483
Target:  5'- uCGCGcUCGGCGCagGCCGgCGCGuACu -3'
miRNA:   3'- -GCGCuAGCUGUGa-CGGCaGCGCuUGc -5'
26043 5' -55.2 NC_005342.2 + 22807 0.7 0.460955
Target:  5'- gGUGuUCGucGCGCUGUCGcUCGUGAACGu -3'
miRNA:   3'- gCGCuAGC--UGUGACGGC-AGCGCUUGC- -5'
26043 5' -55.2 NC_005342.2 + 41162 0.72 0.394497
Target:  5'- aCGCGggCGAguCgGCCGUCGUGAuccaugGCGa -3'
miRNA:   3'- -GCGCuaGCUguGaCGGCAGCGCU------UGC- -5'
26043 5' -55.2 NC_005342.2 + 33062 0.76 0.212052
Target:  5'- gCGCGAgaaCGGCGC-GCCGUCGUgGAACGc -3'
miRNA:   3'- -GCGCUa--GCUGUGaCGGCAGCG-CUUGC- -5'
26043 5' -55.2 NC_005342.2 + 9164 0.7 0.470929
Target:  5'- uCGCGA-CGGCAgUGUCGaUCGCGGuGCGc -3'
miRNA:   3'- -GCGCUaGCUGUgACGGC-AGCGCU-UGC- -5'
26043 5' -55.2 NC_005342.2 + 39349 0.75 0.254388
Target:  5'- aGCGGcCGACuGCUGCCGgaCGCGAACu -3'
miRNA:   3'- gCGCUaGCUG-UGACGGCa-GCGCUUGc -5'
26043 5' -55.2 NC_005342.2 + 38136 0.72 0.394497
Target:  5'- gGCGAUCGAgACgcuUGCCG-CGuCGAACu -3'
miRNA:   3'- gCGCUAGCUgUG---ACGGCaGC-GCUUGc -5'
26043 5' -55.2 NC_005342.2 + 15563 0.7 0.479998
Target:  5'- -aCGGUCGcACGCUGCuCGUCggucacgguuucgGCGAACGu -3'
miRNA:   3'- gcGCUAGC-UGUGACG-GCAG-------------CGCUUGC- -5'
26043 5' -55.2 NC_005342.2 + 22875 0.69 0.543498
Target:  5'- gCGCGAUCG-UACUGgCGcUCGUGA-CGa -3'
miRNA:   3'- -GCGCUAGCuGUGACgGC-AGCGCUuGC- -5'
26043 5' -55.2 NC_005342.2 + 672 0.74 0.281564
Target:  5'- gCGCGAUCG-UGCcGCCGccCGCGAGCGc -3'
miRNA:   3'- -GCGCUAGCuGUGaCGGCa-GCGCUUGC- -5'
26043 5' -55.2 NC_005342.2 + 18420 0.72 0.35941
Target:  5'- uCGCGAUCGGCGgcGUCGacacCGCGAGCGc -3'
miRNA:   3'- -GCGCUAGCUGUgaCGGCa---GCGCUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.