miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26044 3' -66.1 NC_005342.2 + 24536 0.66 0.226165
Target:  5'- uCCGGCCGGcgGCggguaCGUGCCGgGCUaccaguacGGCGu -3'
miRNA:   3'- uGGCCGGCUa-CG-----GCGCGGC-CGA--------CCGC- -5'
26044 3' -66.1 NC_005342.2 + 1830 0.66 0.226165
Target:  5'- gGCCGGCgucgugCGGuucUGgCGCGCCuGGCccggauUGGCGg -3'
miRNA:   3'- -UGGCCG------GCU---ACgGCGCGG-CCG------ACCGC- -5'
26044 3' -66.1 NC_005342.2 + 6421 0.66 0.226165
Target:  5'- gGCCGGgCGccGUCGUGCCGuCgGGCa -3'
miRNA:   3'- -UGGCCgGCuaCGGCGCGGCcGaCCGc -5'
26044 3' -66.1 NC_005342.2 + 38936 0.66 0.224492
Target:  5'- gUCGGCCGAgcugcgugcaaUGCUcgaccgcaccccgaGCgGCCGGCaGGCGc -3'
miRNA:   3'- uGGCCGGCU-----------ACGG--------------CG-CGGCCGaCCGC- -5'
26044 3' -66.1 NC_005342.2 + 29451 0.66 0.22063
Target:  5'- --aGGCCGcUGCagcguccgucggCGUGCCGGCagcGGCGg -3'
miRNA:   3'- uggCCGGCuACG------------GCGCGGCCGa--CCGC- -5'
26044 3' -66.1 NC_005342.2 + 35198 0.66 0.22063
Target:  5'- aACgGGCCGGUGagCGUGCCGcCUGcgaGCGg -3'
miRNA:   3'- -UGgCCGGCUACg-GCGCGGCcGAC---CGC- -5'
26044 3' -66.1 NC_005342.2 + 28482 0.66 0.22063
Target:  5'- cGCCGcGUCGA--CCGCGCgGGUcgcGGCGg -3'
miRNA:   3'- -UGGC-CGGCUacGGCGCGgCCGa--CCGC- -5'
26044 3' -66.1 NC_005342.2 + 18333 0.66 0.22063
Target:  5'- -gCGGCCGAggacGCCGCGCgUGGCccgaucGCGc -3'
miRNA:   3'- ugGCCGGCUa---CGGCGCG-GCCGac----CGC- -5'
26044 3' -66.1 NC_005342.2 + 22216 0.66 0.215211
Target:  5'- aACCGaccuucacGCCGAcugGCCuGCaGCUGGCcGGCGa -3'
miRNA:   3'- -UGGC--------CGGCUa--CGG-CG-CGGCCGaCCGC- -5'
26044 3' -66.1 NC_005342.2 + 16606 0.66 0.215211
Target:  5'- gAUCGGCCGAcUGUucaCGCGCgCGGCcacaGCGg -3'
miRNA:   3'- -UGGCCGGCU-ACG---GCGCG-GCCGac--CGC- -5'
26044 3' -66.1 NC_005342.2 + 27359 0.66 0.215211
Target:  5'- cGCgaGGCCGA-GCCGCGCCuGCagaaacaccacGGCGc -3'
miRNA:   3'- -UGg-CCGGCUaCGGCGCGGcCGa----------CCGC- -5'
26044 3' -66.1 NC_005342.2 + 37403 0.66 0.215211
Target:  5'- gGCCGGCCcg-GCgCGUGgCGGCucaaUGGCc -3'
miRNA:   3'- -UGGCCGGcuaCG-GCGCgGCCG----ACCGc -5'
26044 3' -66.1 NC_005342.2 + 3798 0.66 0.214675
Target:  5'- cACCGGCag--GCCaagcgccucgcacGCGCCGGCaaGCGa -3'
miRNA:   3'- -UGGCCGgcuaCGG-------------CGCGGCCGacCGC- -5'
26044 3' -66.1 NC_005342.2 + 18863 0.66 0.210431
Target:  5'- cGCCGGCaacgagccgcuCGAggugcguguuaagcaGCCGCG-CGGCUGGUa -3'
miRNA:   3'- -UGGCCG-----------GCUa--------------CGGCGCgGCCGACCGc -5'
26044 3' -66.1 NC_005342.2 + 42926 0.66 0.209906
Target:  5'- cGCCGcGCCGAcgucgGCCaacaGCCGGCcgccUGGCc -3'
miRNA:   3'- -UGGC-CGGCUa----CGGcg--CGGCCG----ACCGc -5'
26044 3' -66.1 NC_005342.2 + 45303 0.66 0.206777
Target:  5'- cGCCGGCgCGAcgcugcaggcUGCCGgugucgccgccgauaCGCCGGCgagcGCGa -3'
miRNA:   3'- -UGGCCG-GCU----------ACGGC---------------GCGGCCGac--CGC- -5'
26044 3' -66.1 NC_005342.2 + 2644 0.66 0.204714
Target:  5'- gACCGGCaucaCGAUcUCGCGaCCGgGCUGGuCGa -3'
miRNA:   3'- -UGGCCG----GCUAcGGCGC-GGC-CGACC-GC- -5'
26044 3' -66.1 NC_005342.2 + 12477 0.66 0.204714
Target:  5'- uGCCGGCauacggGCCGU-CCGGCUcGGUGu -3'
miRNA:   3'- -UGGCCGgcua--CGGCGcGGCCGA-CCGC- -5'
26044 3' -66.1 NC_005342.2 + 3478 0.66 0.204714
Target:  5'- -aCGGCCaaGAUGCCGcCGUCGGUcaGGUa -3'
miRNA:   3'- ugGCCGG--CUACGGC-GCGGCCGa-CCGc -5'
26044 3' -66.1 NC_005342.2 + 44773 0.66 0.199634
Target:  5'- gGCgGGCgGcgcGCCGgGCCGGCUcaccGGCc -3'
miRNA:   3'- -UGgCCGgCua-CGGCgCGGCCGA----CCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.