miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26044 5' -52.7 NC_005342.2 + 43284 0.66 0.860233
Target:  5'- uGGCGuGUcGCGcGCUCGCCuCGAa--- -3'
miRNA:   3'- -CCGC-CGuUGCuUGAGCGGuGCUaacc -5'
26044 5' -52.7 NC_005342.2 + 3404 0.66 0.860233
Target:  5'- uGCGGC-GCGG--UCGCCACcuGGUUGa -3'
miRNA:   3'- cCGCCGuUGCUugAGCGGUG--CUAACc -5'
26044 5' -52.7 NC_005342.2 + 39788 0.66 0.860233
Target:  5'- cGGCGGCAA-GAAC-CGCgauauCACGAUc-- -3'
miRNA:   3'- -CCGCCGUUgCUUGaGCG-----GUGCUAacc -5'
26044 5' -52.7 NC_005342.2 + 47722 0.66 0.851771
Target:  5'- cGGCGGCGugACGAccACaUCGaacggCACGGcgUGGg -3'
miRNA:   3'- -CCGCCGU--UGCU--UG-AGCg----GUGCUa-ACC- -5'
26044 5' -52.7 NC_005342.2 + 24850 0.66 0.851771
Target:  5'- cGGCGGCcgcACGAAC-CGCaCGgGAUa-- -3'
miRNA:   3'- -CCGCCGu--UGCUUGaGCG-GUgCUAacc -5'
26044 5' -52.7 NC_005342.2 + 34837 0.66 0.851771
Target:  5'- cGGCaGcCAAUGAGCaUGCCGCGuUUGa -3'
miRNA:   3'- -CCGcC-GUUGCUUGaGCGGUGCuAACc -5'
26044 5' -52.7 NC_005342.2 + 21857 0.66 0.851771
Target:  5'- gGGCGGCuacccCGAAgUCGCCugccCGAauccGGa -3'
miRNA:   3'- -CCGCCGuu---GCUUgAGCGGu---GCUaa--CC- -5'
26044 5' -52.7 NC_005342.2 + 23230 0.66 0.843072
Target:  5'- -aCGGCGGCGAACgCGCCGguCGuGUUGu -3'
miRNA:   3'- ccGCCGUUGCUUGaGCGGU--GC-UAACc -5'
26044 5' -52.7 NC_005342.2 + 33128 0.66 0.834146
Target:  5'- cGCGGCGAcugcgcgcCGAACcguaGCCGCGAguccggcagcaUUGGc -3'
miRNA:   3'- cCGCCGUU--------GCUUGag--CGGUGCU-----------AACC- -5'
26044 5' -52.7 NC_005342.2 + 41402 0.66 0.831425
Target:  5'- uGGCGGCGauGCGGGCUuucgcgcguacgcgCGCCGCu----- -3'
miRNA:   3'- -CCGCCGU--UGCUUGA--------------GCGGUGcuaacc -5'
26044 5' -52.7 NC_005342.2 + 10617 0.66 0.825001
Target:  5'- aGGUGGCGGCGAAgaaaggugaCGUCACGGUc-- -3'
miRNA:   3'- -CCGCCGUUGCUUga-------GCGGUGCUAacc -5'
26044 5' -52.7 NC_005342.2 + 10558 0.66 0.825001
Target:  5'- aGGCGGUgcuACGAGCUgGCC-UGAa--- -3'
miRNA:   3'- -CCGCCGu--UGCUUGAgCGGuGCUaacc -5'
26044 5' -52.7 NC_005342.2 + 30758 0.66 0.825001
Target:  5'- aGCGGCAGUGGucGCcCGCgACGAUguagGGa -3'
miRNA:   3'- cCGCCGUUGCU--UGaGCGgUGCUAa---CC- -5'
26044 5' -52.7 NC_005342.2 + 7533 0.66 0.825001
Target:  5'- cGcCGGUGACGA--UCGCgGCGAUcGGg -3'
miRNA:   3'- cC-GCCGUUGCUugAGCGgUGCUAaCC- -5'
26044 5' -52.7 NC_005342.2 + 47251 0.66 0.825001
Target:  5'- gGGC-GCAACGGcaaucaacCUCGCCACGGc--- -3'
miRNA:   3'- -CCGcCGUUGCUu-------GAGCGGUGCUaacc -5'
26044 5' -52.7 NC_005342.2 + 3636 0.66 0.825001
Target:  5'- cGGCGGCAGCGGcacgguGCUCucCCACa----- -3'
miRNA:   3'- -CCGCCGUUGCU------UGAGc-GGUGcuaacc -5'
26044 5' -52.7 NC_005342.2 + 41415 0.66 0.825001
Target:  5'- gGGCGGCAAcuuCGGGCggcaCGgCGCGAUc-- -3'
miRNA:   3'- -CCGCCGUU---GCUUGa---GCgGUGCUAacc -5'
26044 5' -52.7 NC_005342.2 + 40441 0.66 0.824075
Target:  5'- cGGCGGCGGC-AAgUCGCUccugaacGCGAUg-- -3'
miRNA:   3'- -CCGCCGUUGcUUgAGCGG-------UGCUAacc -5'
26044 5' -52.7 NC_005342.2 + 24085 0.67 0.796359
Target:  5'- cGGCGGCAcgaaccCGAACgUCGUCGuCGGUUu- -3'
miRNA:   3'- -CCGCCGUu-----GCUUG-AGCGGU-GCUAAcc -5'
26044 5' -52.7 NC_005342.2 + 13503 0.67 0.79043
Target:  5'- gGGCGGCGucacgucaacuaaggGCGGcaUCGUCGaGAUUGGc -3'
miRNA:   3'- -CCGCCGU---------------UGCUugAGCGGUgCUAACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.