miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26044 5' -52.7 NC_005342.2 + 32566 0.67 0.786444
Target:  5'- uGGCGcGC-ACGAACuUCGCgGCGuUUGu -3'
miRNA:   3'- -CCGC-CGuUGCUUG-AGCGgUGCuAACc -5'
26044 5' -52.7 NC_005342.2 + 41742 0.67 0.786444
Target:  5'- cGCGGcCAACGAgcggggcguGCUCGCCgaaaGCGAc--- -3'
miRNA:   3'- cCGCC-GUUGCU---------UGAGCGG----UGCUaacc -5'
26044 5' -52.7 NC_005342.2 + 19258 0.67 0.786444
Target:  5'- cGGCGGCcGCGcAGCUgauUGCCGCGu---- -3'
miRNA:   3'- -CCGCCGuUGC-UUGA---GCGGUGCuaacc -5'
26044 5' -52.7 NC_005342.2 + 15494 0.67 0.786444
Target:  5'- cGGCGGCAGCGAccuGCgCGUgACGu---- -3'
miRNA:   3'- -CCGCCGUUGCU---UGaGCGgUGCuaacc -5'
26044 5' -52.7 NC_005342.2 + 35584 0.67 0.786444
Target:  5'- aGGCGGCGACacuGGCgCGCCGgGcg-GGg -3'
miRNA:   3'- -CCGCCGUUGc--UUGaGCGGUgCuaaCC- -5'
26044 5' -52.7 NC_005342.2 + 47850 0.67 0.785443
Target:  5'- aGGCGGCAAcCGGGCgcgcgcaccgCGCCGgcauggugaccguCGAaUGGu -3'
miRNA:   3'- -CCGCCGUU-GCUUGa---------GCGGU-------------GCUaACC- -5'
26044 5' -52.7 NC_005342.2 + 35546 0.67 0.776364
Target:  5'- uGCGGCAACcccagauACuUCGCCGCG-UUGa -3'
miRNA:   3'- cCGCCGUUGcu-----UG-AGCGGUGCuAACc -5'
26044 5' -52.7 NC_005342.2 + 22972 0.67 0.776364
Target:  5'- gGGCGGC-GCGGACgcagacgucgCGCuCGCGAUc-- -3'
miRNA:   3'- -CCGCCGuUGCUUGa---------GCG-GUGCUAacc -5'
26044 5' -52.7 NC_005342.2 + 25679 0.67 0.776364
Target:  5'- aGGCGGCGACcugauccgccuGAACgC-CCGCGAgaaUGGc -3'
miRNA:   3'- -CCGCCGUUG-----------CUUGaGcGGUGCUa--ACC- -5'
26044 5' -52.7 NC_005342.2 + 29478 0.67 0.766131
Target:  5'- cGGCaGCGGCGggUaCGCCucCGGUgccgGGu -3'
miRNA:   3'- -CCGcCGUUGCuuGaGCGGu-GCUAa---CC- -5'
26044 5' -52.7 NC_005342.2 + 5517 0.67 0.766131
Target:  5'- uGGcCGGCGACG-GCUUGgCGCGAg--- -3'
miRNA:   3'- -CC-GCCGUUGCuUGAGCgGUGCUaacc -5'
26044 5' -52.7 NC_005342.2 + 44910 0.68 0.755757
Target:  5'- cGCGGCAGCuguuccgCGCCACGAa--- -3'
miRNA:   3'- cCGCCGUUGcuuga--GCGGUGCUaacc -5'
26044 5' -52.7 NC_005342.2 + 32065 0.68 0.752618
Target:  5'- uGGCGGCGAUGGcaccgugggcggucGCaUCGuCUACGA-UGGc -3'
miRNA:   3'- -CCGCCGUUGCU--------------UG-AGC-GGUGCUaACC- -5'
26044 5' -52.7 NC_005342.2 + 39565 0.68 0.745252
Target:  5'- cGGCGGCAccguaucgGCGAcguuGCUCGaCACGGg--- -3'
miRNA:   3'- -CCGCCGU--------UGCU----UGAGCgGUGCUaacc -5'
26044 5' -52.7 NC_005342.2 + 38482 0.68 0.744195
Target:  5'- aGCGGCAucgcCGAGCUUGCCGaaaugucCGGcaUGGg -3'
miRNA:   3'- cCGCCGUu---GCUUGAGCGGU-------GCUa-ACC- -5'
26044 5' -52.7 NC_005342.2 + 39271 0.68 0.734631
Target:  5'- cGCGGacuCGAGCggCGUCACGGUcGGc -3'
miRNA:   3'- cCGCCguuGCUUGa-GCGGUGCUAaCC- -5'
26044 5' -52.7 NC_005342.2 + 9774 0.68 0.734631
Target:  5'- uGCGGCAGCGcaaucaucGCgucgCGCCACGGa--- -3'
miRNA:   3'- cCGCCGUUGCu-------UGa---GCGGUGCUaacc -5'
26044 5' -52.7 NC_005342.2 + 26336 0.68 0.734631
Target:  5'- cGCGGauACGGaacaGCUCGCCACGcacGUUGa -3'
miRNA:   3'- cCGCCguUGCU----UGAGCGGUGC---UAACc -5'
26044 5' -52.7 NC_005342.2 + 46802 0.68 0.723903
Target:  5'- aGGCgGGCAAagaccCGAagcaaGC-CGCCGCGAUcGGa -3'
miRNA:   3'- -CCG-CCGUU-----GCU-----UGaGCGGUGCUAaCC- -5'
26044 5' -52.7 NC_005342.2 + 2837 0.68 0.720666
Target:  5'- cGCGGCGuuuGCGAACgaCGUCGCGGcggcgaggcugaugUUGGc -3'
miRNA:   3'- cCGCCGU---UGCUUGa-GCGGUGCU--------------AACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.