miRNA display CGI


Results 1 - 20 of 83 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26044 5' -52.7 NC_005342.2 + 41004 0.78 0.221377
Target:  5'- gGGCGGCGAcuucgacgaggcCGAGCUCGCCcggcgcGCGAU-GGa -3'
miRNA:   3'- -CCGCCGUU------------GCUUGAGCGG------UGCUAaCC- -5'
26044 5' -52.7 NC_005342.2 + 19941 0.68 0.713081
Target:  5'- --gGGCGGCGAGC-CGCCGuCGAUg-- -3'
miRNA:   3'- ccgCCGUUGCUUGaGCGGU-GCUAacc -5'
26044 5' -52.7 NC_005342.2 + 24757 0.68 0.713081
Target:  5'- cGCGGCGACGA--UCGCuuuCugGAUguccUGGa -3'
miRNA:   3'- cCGCCGUUGCUugAGCG---GugCUA----ACC- -5'
26044 5' -52.7 NC_005342.2 + 39788 0.66 0.860233
Target:  5'- cGGCGGCAA-GAAC-CGCgauauCACGAUc-- -3'
miRNA:   3'- -CCGCCGUUgCUUGaGCG-----GUGCUAacc -5'
26044 5' -52.7 NC_005342.2 + 45021 0.72 0.49376
Target:  5'- aGGCguucgagaagGGCAuCGAcgguuacaaGCUCGCCGCGAU-GGa -3'
miRNA:   3'- -CCG----------CCGUuGCU---------UGAGCGGUGCUAaCC- -5'
26044 5' -52.7 NC_005342.2 + 2671 0.72 0.514858
Target:  5'- cGGCGGCGGCcgacaggccGAGCUCGUCgGCGAg--- -3'
miRNA:   3'- -CCGCCGUUG---------CUUGAGCGG-UGCUaacc -5'
26044 5' -52.7 NC_005342.2 + 44107 0.71 0.569044
Target:  5'- cGGCGGC-GCGcGCUCGCUACa----- -3'
miRNA:   3'- -CCGCCGuUGCuUGAGCGGUGcuaacc -5'
26044 5' -52.7 NC_005342.2 + 1349 0.71 0.569044
Target:  5'- cGGCGGCcuugAACGAACgcaugaaGCCGCGcUUGu -3'
miRNA:   3'- -CCGCCG----UUGCUUGag-----CGGUGCuAACc -5'
26044 5' -52.7 NC_005342.2 + 30412 0.69 0.657979
Target:  5'- cGGCGGCGGC-AACuUCGuCCugGAagcUGGc -3'
miRNA:   3'- -CCGCCGUUGcUUG-AGC-GGugCUa--ACC- -5'
26044 5' -52.7 NC_005342.2 + 25593 0.69 0.702178
Target:  5'- cGCGGCGACGAuaaacgcCUCGCUgcuuGCGAg--- -3'
miRNA:   3'- cCGCCGUUGCUu------GAGCGG----UGCUaacc -5'
26044 5' -52.7 NC_005342.2 + 13342 0.69 0.680172
Target:  5'- cGCGGC-ACGAGCggcgUGuCCAUGAUcUGGu -3'
miRNA:   3'- cCGCCGuUGCUUGa---GC-GGUGCUA-ACC- -5'
26044 5' -52.7 NC_005342.2 + 8990 0.7 0.635687
Target:  5'- cGGCuugccaGGCGGCGcGCUCGCUGCcuUUGGc -3'
miRNA:   3'- -CCG------CCGUUGCuUGAGCGGUGcuAACC- -5'
26044 5' -52.7 NC_005342.2 + 12101 0.78 0.246104
Target:  5'- aGCGGC-ACGAGCUCGCCGuCG--UGGu -3'
miRNA:   3'- cCGCCGuUGCUUGAGCGGU-GCuaACC- -5'
26044 5' -52.7 NC_005342.2 + 30828 0.69 0.691205
Target:  5'- aGCGGC-GCGAgcugcuGCUCGCgCGCGAgcccGGc -3'
miRNA:   3'- cCGCCGuUGCU------UGAGCG-GUGCUaa--CC- -5'
26044 5' -52.7 NC_005342.2 + 3894 0.77 0.287433
Target:  5'- aGGCGGCAGCGGcgGCagGCCGaccggcaGGUUGGc -3'
miRNA:   3'- -CCGCCGUUGCU--UGagCGGUg------CUAACC- -5'
26044 5' -52.7 NC_005342.2 + 28343 0.7 0.591142
Target:  5'- uGCGGUGcACGAGCUCGCUuACGAg--- -3'
miRNA:   3'- cCGCCGU-UGCUUGAGCGG-UGCUaacc -5'
26044 5' -52.7 NC_005342.2 + 9237 0.69 0.702178
Target:  5'- uGCGGCAuagccuucguGCGGAUUCGgcuUCACGGUcGGg -3'
miRNA:   3'- cCGCCGU----------UGCUUGAGC---GGUGCUAaCC- -5'
26044 5' -52.7 NC_005342.2 + 39043 0.68 0.713081
Target:  5'- cGGCGGCGGCGcGCUU-CUACGAc--- -3'
miRNA:   3'- -CCGCCGUUGCuUGAGcGGUGCUaacc -5'
26044 5' -52.7 NC_005342.2 + 20222 0.73 0.462885
Target:  5'- cGUGGCGGCGA--UCGaCCGCGAcUGGc -3'
miRNA:   3'- cCGCCGUUGCUugAGC-GGUGCUaACC- -5'
26044 5' -52.7 NC_005342.2 + 19633 0.72 0.525544
Target:  5'- cGCGGcCGACGcuggccgucaacAGCUCGCCACGGa--- -3'
miRNA:   3'- cCGCC-GUUGC------------UUGAGCGGUGCUaacc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.