miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26045 3' -55.3 NC_005342.2 + 22573 0.66 0.700494
Target:  5'- cGCCGGA---CGGUUcgCUGUGGUcgAACc -3'
miRNA:   3'- -CGGCCUacuGCCGAuaGGCACCG--UUG- -5'
26045 3' -55.3 NC_005342.2 + 23667 0.66 0.700494
Target:  5'- aCCGGcuuccGGCGGCUGcaUCGUGGcCGGCg -3'
miRNA:   3'- cGGCCua---CUGCCGAUa-GGCACC-GUUG- -5'
26045 3' -55.3 NC_005342.2 + 31991 0.66 0.700494
Target:  5'- uCCGGAUGGC-GCggGUCgGcGGCGAUg -3'
miRNA:   3'- cGGCCUACUGcCGa-UAGgCaCCGUUG- -5'
26045 3' -55.3 NC_005342.2 + 19534 0.66 0.667504
Target:  5'- uGCCGGAaGuCGuGCUGcUCgCGaucUGGCAGCa -3'
miRNA:   3'- -CGGCCUaCuGC-CGAU-AG-GC---ACCGUUG- -5'
26045 3' -55.3 NC_005342.2 + 38555 0.66 0.667504
Target:  5'- aCCGGAcGGCGuGCgcagcCCGcagGGCAGCg -3'
miRNA:   3'- cGGCCUaCUGC-CGaua--GGCa--CCGUUG- -5'
26045 3' -55.3 NC_005342.2 + 17614 0.66 0.656424
Target:  5'- cGCCGGccGcgccCGGUg--CCGUGGcCGACa -3'
miRNA:   3'- -CGGCCuaCu---GCCGauaGGCACC-GUUG- -5'
26045 3' -55.3 NC_005342.2 + 11684 0.66 0.656424
Target:  5'- cGCCGGgcGGCGuGCUggcGUCC-UGcGCGAUg -3'
miRNA:   3'- -CGGCCuaCUGC-CGA---UAGGcAC-CGUUG- -5'
26045 3' -55.3 NC_005342.2 + 38395 0.67 0.623092
Target:  5'- cGCCGGcUGGC-GCUGaagGUGGCGGCa -3'
miRNA:   3'- -CGGCCuACUGcCGAUaggCACCGUUG- -5'
26045 3' -55.3 NC_005342.2 + 30430 0.67 0.600893
Target:  5'- cCUGGAagcUGGCGaGCUcggCCGUGGCGu- -3'
miRNA:   3'- cGGCCU---ACUGC-CGAua-GGCACCGUug -5'
26045 3' -55.3 NC_005342.2 + 8945 0.68 0.567821
Target:  5'- gGCUGGAUcguGCGGCcGUgCGcGGCGGCg -3'
miRNA:   3'- -CGGCCUAc--UGCCGaUAgGCaCCGUUG- -5'
26045 3' -55.3 NC_005342.2 + 43895 0.68 0.552538
Target:  5'- cGCuCGGcaagGGCGGCgcuuugcggcguUCCGUGGUGGCu -3'
miRNA:   3'- -CG-GCCua--CUGCCGau----------AGGCACCGUUG- -5'
26045 3' -55.3 NC_005342.2 + 39441 0.69 0.482505
Target:  5'- aGCCGGGUaugccGGuCGcGCUGUUCGgcacgGGCGACu -3'
miRNA:   3'- -CGGCCUA-----CU-GC-CGAUAGGCa----CCGUUG- -5'
26045 3' -55.3 NC_005342.2 + 43042 0.7 0.43242
Target:  5'- cGCCGGAaaucaUGACGGCcAUC--UGGCAGa -3'
miRNA:   3'- -CGGCCU-----ACUGCCGaUAGgcACCGUUg -5'
26045 3' -55.3 NC_005342.2 + 22531 0.7 0.422769
Target:  5'- cGCCaGGcGUGACGGCUA-CCGccGGCAc- -3'
miRNA:   3'- -CGG-CC-UACUGCCGAUaGGCa-CCGUug -5'
26045 3' -55.3 NC_005342.2 + 18544 0.71 0.403863
Target:  5'- cCCGGGUG-CGGCag-CCGgcgcGGCGGCg -3'
miRNA:   3'- cGGCCUACuGCCGauaGGCa---CCGUUG- -5'
26045 3' -55.3 NC_005342.2 + 41385 0.75 0.210042
Target:  5'- cGCUGG---GCGGCgcgCCGUGGCGGCg -3'
miRNA:   3'- -CGGCCuacUGCCGauaGGCACCGUUG- -5'
26045 3' -55.3 NC_005342.2 + 18180 0.77 0.17372
Target:  5'- uGCCGGGUGAUGcGCUcgUCGUGcgcGCGGCa -3'
miRNA:   3'- -CGGCCUACUGC-CGAuaGGCAC---CGUUG- -5'
26045 3' -55.3 NC_005342.2 + 38190 1.1 0.00067
Target:  5'- gGCCGGAUGACGGCUAUCCGUGGCAACc -3'
miRNA:   3'- -CGGCCUACUGCCGAUAGGCACCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.