miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26045 5' -58.1 NC_005342.2 + 28321 0.66 0.576569
Target:  5'- cUGUUGACGGCcagcgucGGcCGCGCucgCCGcGCu -3'
miRNA:   3'- aGCAACUGCUGc------CC-GCGCGua-GGC-CG- -5'
26045 5' -58.1 NC_005342.2 + 13866 0.66 0.576569
Target:  5'- gUCGgccGGC-ACGGGCuGCGCGg-CGGCc -3'
miRNA:   3'- -AGCaa-CUGcUGCCCG-CGCGUagGCCG- -5'
26045 5' -58.1 NC_005342.2 + 17604 0.66 0.56593
Target:  5'- gUCGUgaaGACGcCGGcCGCGC--CCGGUg -3'
miRNA:   3'- -AGCAa--CUGCuGCCcGCGCGuaGGCCG- -5'
26045 5' -58.1 NC_005342.2 + 21203 0.66 0.56593
Target:  5'- aCGUgcgcaucaaugGGCGGCcgucGCGCGCAUCUGGa -3'
miRNA:   3'- aGCAa----------CUGCUGcc--CGCGCGUAGGCCg -5'
26045 5' -58.1 NC_005342.2 + 1159 0.66 0.56593
Target:  5'- -aGUaGGuCG-CGGGUGCGCuucucguagCCGGCg -3'
miRNA:   3'- agCAaCU-GCuGCCCGCGCGua-------GGCCG- -5'
26045 5' -58.1 NC_005342.2 + 10863 0.66 0.56593
Target:  5'- aCGaUGAgGACGGcCGCGCGaCgCGGUg -3'
miRNA:   3'- aGCaACUgCUGCCcGCGCGUaG-GCCG- -5'
26045 5' -58.1 NC_005342.2 + 14288 0.66 0.56593
Target:  5'- -----cGCGACGGGCaucacgGUGcCGUCUGGCg -3'
miRNA:   3'- agcaacUGCUGCCCG------CGC-GUAGGCCG- -5'
26045 5' -58.1 NC_005342.2 + 38737 0.66 0.56593
Target:  5'- cCGcacGCGGCGaGGCGCcccCGUUCGGCg -3'
miRNA:   3'- aGCaacUGCUGC-CCGCGc--GUAGGCCG- -5'
26045 5' -58.1 NC_005342.2 + 38511 0.66 0.555342
Target:  5'- cUCGgcGGCGguGCGGcgcccgcacuugGCGCGCAagaCGGCg -3'
miRNA:   3'- -AGCaaCUGC--UGCC------------CGCGCGUag-GCCG- -5'
26045 5' -58.1 NC_005342.2 + 29905 0.66 0.555342
Target:  5'- aUCGgcuugUGcaGCGGCGGGCagcgcgaucaGCGCuagaacucggCCGGCu -3'
miRNA:   3'- -AGCa----AC--UGCUGCCCG----------CGCGua--------GGCCG- -5'
26045 5' -58.1 NC_005342.2 + 41206 0.66 0.555342
Target:  5'- gUCGUauGCGAucggcuaccuCGaGGCGCGCGaCCGGg -3'
miRNA:   3'- -AGCAacUGCU----------GC-CCGCGCGUaGGCCg -5'
26045 5' -58.1 NC_005342.2 + 35514 0.66 0.555342
Target:  5'- ---aUGACGAccCGGGCGUGC---CGGCc -3'
miRNA:   3'- agcaACUGCU--GCCCGCGCGuagGCCG- -5'
26045 5' -58.1 NC_005342.2 + 9318 0.66 0.544813
Target:  5'- uUCGUguucGuCGuCGGcGCGCgGCGUCgGGCc -3'
miRNA:   3'- -AGCAa---CuGCuGCC-CGCG-CGUAGgCCG- -5'
26045 5' -58.1 NC_005342.2 + 6636 0.66 0.544813
Target:  5'- cUCGgcGcgcuCGAgCaGGCGCGCAUCCGccGCu -3'
miRNA:   3'- -AGCaaCu---GCU-GcCCGCGCGUAGGC--CG- -5'
26045 5' -58.1 NC_005342.2 + 9032 0.66 0.544813
Target:  5'- cUCGgc--CGACGGGaUGCGCGggCCGuGCu -3'
miRNA:   3'- -AGCaacuGCUGCCC-GCGCGUa-GGC-CG- -5'
26045 5' -58.1 NC_005342.2 + 30985 0.66 0.544813
Target:  5'- ----cGGCGACGGcGUaugccgcgaguuGCGCGUUCGGUu -3'
miRNA:   3'- agcaaCUGCUGCC-CG------------CGCGUAGGCCG- -5'
26045 5' -58.1 NC_005342.2 + 16835 0.66 0.544813
Target:  5'- -aGgcGAuCGACGGGCGacuGUUCGGCa -3'
miRNA:   3'- agCaaCU-GCUGCCCGCgcgUAGGCCG- -5'
26045 5' -58.1 NC_005342.2 + 23932 0.66 0.534349
Target:  5'- cUUGUaGACGuaguGCGGGuUGUGCccgCCGGCu -3'
miRNA:   3'- -AGCAaCUGC----UGCCC-GCGCGua-GGCCG- -5'
26045 5' -58.1 NC_005342.2 + 11408 0.66 0.534349
Target:  5'- gCGgccGGCGAUGGccguaGCGCGCAcucgaCGGCa -3'
miRNA:   3'- aGCaa-CUGCUGCC-----CGCGCGUag---GCCG- -5'
26045 5' -58.1 NC_005342.2 + 9604 0.66 0.534349
Target:  5'- cCGgcUGcCGGCGGcGCGCcuGCGcCCGGCu -3'
miRNA:   3'- aGCa-ACuGCUGCC-CGCG--CGUaGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.