miRNA display CGI


Results 1 - 20 of 61 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26046 3' -54.9 NC_005342.2 + 21474 0.66 0.713081
Target:  5'- cCGGCCGAUuGCCUaugcgacuCGCGAAGuGUGg -3'
miRNA:   3'- -GCCGGCUGuUGGGc-------GCGUUUCuCAUg -5'
26046 3' -54.9 NC_005342.2 + 3279 0.66 0.702178
Target:  5'- uCGGCCGcCGACgUGCGCGcgcAGGAuaGCu -3'
miRNA:   3'- -GCCGGCuGUUGgGCGCGU---UUCUcaUG- -5'
26046 3' -54.9 NC_005342.2 + 20879 0.66 0.691205
Target:  5'- gGGCggCGACaAGCCCGgCGCAgcGcGUGCu -3'
miRNA:   3'- gCCG--GCUG-UUGGGC-GCGUuuCuCAUG- -5'
26046 3' -54.9 NC_005342.2 + 29816 0.66 0.691205
Target:  5'- aCGcGUCGaugcGCGACCCGCGCAAcuGGaAGaUGCc -3'
miRNA:   3'- -GC-CGGC----UGUUGGGCGCGUU--UC-UC-AUG- -5'
26046 3' -54.9 NC_005342.2 + 16917 0.66 0.680172
Target:  5'- uGGCCGGCAuugcggGCgCCGUGCucGGcgucggcgcaGGUGCg -3'
miRNA:   3'- gCCGGCUGU------UG-GGCGCGuuUC----------UCAUG- -5'
26046 3' -54.9 NC_005342.2 + 34083 0.66 0.680172
Target:  5'- aCGGCCGccgcGCAGCCCGUGCc-GGccgACu -3'
miRNA:   3'- -GCCGGC----UGUUGGGCGCGuuUCucaUG- -5'
26046 3' -54.9 NC_005342.2 + 27640 0.66 0.680172
Target:  5'- aCGGCCGGCAagccuggcaACCaCGuCGCGgcGAGg-- -3'
miRNA:   3'- -GCCGGCUGU---------UGG-GC-GCGUuuCUCaug -5'
26046 3' -54.9 NC_005342.2 + 7947 0.66 0.669093
Target:  5'- gGGCguacauCGACAAaCCGCGCAugcGGUACg -3'
miRNA:   3'- gCCG------GCUGUUgGGCGCGUuucUCAUG- -5'
26046 3' -54.9 NC_005342.2 + 40373 0.66 0.667984
Target:  5'- gCGGCCGACGaacuguucggcgcACUCGCgaccGCAAAGA--ACa -3'
miRNA:   3'- -GCCGGCUGU-------------UGGGCG----CGUUUCUcaUG- -5'
26046 3' -54.9 NC_005342.2 + 39350 0.67 0.656866
Target:  5'- gCGGCCGACugcuGCCgGaCGCGAAcuucacggucgccGAGgcgGCg -3'
miRNA:   3'- -GCCGGCUGu---UGGgC-GCGUUU-------------CUCa--UG- -5'
26046 3' -54.9 NC_005342.2 + 36120 0.67 0.651298
Target:  5'- uCGGCCGACcggcagacggaagcgAuguACCgGCGCAAgcuGGAGcGCg -3'
miRNA:   3'- -GCCGGCUG---------------U---UGGgCGCGUU---UCUCaUG- -5'
26046 3' -54.9 NC_005342.2 + 2237 0.67 0.64684
Target:  5'- aGGCCGugcCAGCCCucgGCGCc--GAGUGg -3'
miRNA:   3'- gCCGGCu--GUUGGG---CGCGuuuCUCAUg -5'
26046 3' -54.9 NC_005342.2 + 14164 0.67 0.640149
Target:  5'- aGGauuCGACAAUCUGCGCGgcugcggcgaacacgGGGAGUGg -3'
miRNA:   3'- gCCg--GCUGUUGGGCGCGU---------------UUCUCAUg -5'
26046 3' -54.9 NC_005342.2 + 38700 0.67 0.635687
Target:  5'- cCGGCCGAuCGACCCGaacugGCAugucGAG-GCg -3'
miRNA:   3'- -GCCGGCU-GUUGGGCg----CGUuu--CUCaUG- -5'
26046 3' -54.9 NC_005342.2 + 5253 0.67 0.621184
Target:  5'- uCGGUCGAgAGCgCCGCccgcucguccgccgGCGAGG-GUGCg -3'
miRNA:   3'- -GCCGGCUgUUG-GGCG--------------CGUUUCuCAUG- -5'
26046 3' -54.9 NC_005342.2 + 18971 0.67 0.613381
Target:  5'- gCGGCCcGCG--CCGCGUAGGGGGcACg -3'
miRNA:   3'- -GCCGGcUGUugGGCGCGUUUCUCaUG- -5'
26046 3' -54.9 NC_005342.2 + 17233 0.67 0.613381
Target:  5'- -aGCCGGCcuGCCCGCGCAugcAGGAcGcGCu -3'
miRNA:   3'- gcCGGCUGu-UGGGCGCGU---UUCU-CaUG- -5'
26046 3' -54.9 NC_005342.2 + 27988 0.67 0.602248
Target:  5'- aGGCCGACAGCgCGCagucggGCAAAGcacucgACg -3'
miRNA:   3'- gCCGGCUGUUGgGCG------CGUUUCuca---UG- -5'
26046 3' -54.9 NC_005342.2 + 37107 0.68 0.59558
Target:  5'- uCGcGCCGGCGuucuuCCCGCGCGGcgucaagcgcgugacAGcGUACu -3'
miRNA:   3'- -GC-CGGCUGUu----GGGCGCGUU---------------UCuCAUG- -5'
26046 3' -54.9 NC_005342.2 + 8018 0.68 0.591142
Target:  5'- uGGCCGGCcGCgUCGCGCAcuucGUACa -3'
miRNA:   3'- gCCGGCUGuUG-GGCGCGUuucuCAUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.