miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26046 3' -54.9 NC_005342.2 + 41149 0.68 0.591142
Target:  5'- -aGCCGACGaguGCCC-CGCc-GGAGUGCc -3'
miRNA:   3'- gcCGGCUGU---UGGGcGCGuuUCUCAUG- -5'
26046 3' -54.9 NC_005342.2 + 9340 0.68 0.578966
Target:  5'- uGGCCGugcCGAUCaGCGCGAAGcggcgcgGGUGCg -3'
miRNA:   3'- gCCGGCu--GUUGGgCGCGUUUC-------UCAUG- -5'
26046 3' -54.9 NC_005342.2 + 40903 0.68 0.569044
Target:  5'- gGGCCGcaacuuuaACGACUCGUGCGcGAGGGcUACc -3'
miRNA:   3'- gCCGGC--------UGUUGGGCGCGU-UUCUC-AUG- -5'
26046 3' -54.9 NC_005342.2 + 41456 0.68 0.569044
Target:  5'- uCGGCgCgGGCGACUCGCGCGccGGGcUAUg -3'
miRNA:   3'- -GCCG-G-CUGUUGGGCGCGUuuCUC-AUG- -5'
26046 3' -54.9 NC_005342.2 + 19463 0.68 0.569044
Target:  5'- cCGcGCCGccGCGACCCGCGCGGucGAcgcgGCg -3'
miRNA:   3'- -GC-CGGC--UGUUGGGCGCGUUu-CUca--UG- -5'
26046 3' -54.9 NC_005342.2 + 35840 0.68 0.55807
Target:  5'- uGG-CGACGGCCUGCGCGAccGGcGCa -3'
miRNA:   3'- gCCgGCUGUUGGGCGCGUUucUCaUG- -5'
26046 3' -54.9 NC_005342.2 + 3103 0.68 0.551515
Target:  5'- uCGGgCGACGACagguaggcgcgaucgCCGCGCAGAcaggcgucGAGUAUc -3'
miRNA:   3'- -GCCgGCUGUUG---------------GGCGCGUUU--------CUCAUG- -5'
26046 3' -54.9 NC_005342.2 + 2676 0.68 0.547157
Target:  5'- gCGGCCGACAggccgaGCUCGUcgGCGAGGuuguucGUGCc -3'
miRNA:   3'- -GCCGGCUGU------UGGGCG--CGUUUCu-----CAUG- -5'
26046 3' -54.9 NC_005342.2 + 46297 0.68 0.547157
Target:  5'- gGGCUGAUAGCCUuaGUAcuGAcGAGUACu -3'
miRNA:   3'- gCCGGCUGUUGGGcgCGU--UU-CUCAUG- -5'
26046 3' -54.9 NC_005342.2 + 19634 0.68 0.54607
Target:  5'- gCGGCCGACGcuggccgucaacaGCUCGC-CAcGGAGaUACa -3'
miRNA:   3'- -GCCGGCUGU-------------UGGGCGcGUuUCUC-AUG- -5'
26046 3' -54.9 NC_005342.2 + 45727 0.69 0.536313
Target:  5'- gGGCUGGCAcgGCCUGCGCu-GGcGUAa -3'
miRNA:   3'- gCCGGCUGU--UGGGCGCGuuUCuCAUg -5'
26046 3' -54.9 NC_005342.2 + 252 0.69 0.525544
Target:  5'- -cGCCGACGACCaGCGCGccGAGc-- -3'
miRNA:   3'- gcCGGCUGUUGGgCGCGUuuCUCaug -5'
26046 3' -54.9 NC_005342.2 + 24537 0.69 0.514858
Target:  5'- cCGGCCGGCGGCggguaCGUGCcGGGcuaccAGUACg -3'
miRNA:   3'- -GCCGGCUGUUGg----GCGCGuUUC-----UCAUG- -5'
26046 3' -54.9 NC_005342.2 + 8199 0.69 0.510608
Target:  5'- uGGCaggauGACGccgGCCCGCGCGAGGuucugaauacguuGUGCg -3'
miRNA:   3'- gCCGg----CUGU---UGGGCGCGUUUCu------------CAUG- -5'
26046 3' -54.9 NC_005342.2 + 18333 0.69 0.504262
Target:  5'- gCGGCCGAgGACgCCGCGCGuggcccGAucGCg -3'
miRNA:   3'- -GCCGGCUgUUG-GGCGCGUuu----CUcaUG- -5'
26046 3' -54.9 NC_005342.2 + 5517 0.69 0.49376
Target:  5'- uGGCCGGCGACggcuUgGCGC---GAGUGCa -3'
miRNA:   3'- gCCGGCUGUUG----GgCGCGuuuCUCAUG- -5'
26046 3' -54.9 NC_005342.2 + 15178 0.69 0.487508
Target:  5'- aCGGCCGGCAGCaggccggucagacggCCGUaCAGauAGGGUGCc -3'
miRNA:   3'- -GCCGGCUGUUG---------------GGCGcGUU--UCUCAUG- -5'
26046 3' -54.9 NC_005342.2 + 11200 0.7 0.473067
Target:  5'- gGGCgCGGCuccuuGCCgGCGCuc-GAGUGCu -3'
miRNA:   3'- gCCG-GCUGu----UGGgCGCGuuuCUCAUG- -5'
26046 3' -54.9 NC_005342.2 + 42650 0.7 0.462885
Target:  5'- gCGGCgUGACGAUCCaGCGCGAAG-GcGCg -3'
miRNA:   3'- -GCCG-GCUGUUGGG-CGCGUUUCuCaUG- -5'
26046 3' -54.9 NC_005342.2 + 18805 0.7 0.456831
Target:  5'- gCGGCCGcaggGCGcgugcugcuaucgaaGCCCGCGCGGc-AGUACg -3'
miRNA:   3'- -GCCGGC----UGU---------------UGGGCGCGUUucUCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.