miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26046 5' -53 NC_005342.2 + 26115 0.66 0.849987
Target:  5'- ---cGCGCcGCGUcGCGGUauUCGAUGGg -3'
miRNA:   3'- gccaUGUGuUGCA-CGCCA--AGCUGCCg -5'
26046 5' -53 NC_005342.2 + 21193 0.66 0.849987
Target:  5'- uCGGgGCAUuACGUGCGcaUCaaugGGCGGCc -3'
miRNA:   3'- -GCCaUGUGuUGCACGCcaAG----CUGCCG- -5'
26046 5' -53 NC_005342.2 + 37015 0.66 0.849987
Target:  5'- aGGcgACGCGuuccagucggucGCG-GCGGUgcUCGACGcGCu -3'
miRNA:   3'- gCCa-UGUGU------------UGCaCGCCA--AGCUGC-CG- -5'
26046 5' -53 NC_005342.2 + 27449 0.66 0.841272
Target:  5'- aCGGcGCgGCGGCGgccggcaGCGGUUgCG-CGGCa -3'
miRNA:   3'- -GCCaUG-UGUUGCa------CGCCAA-GCuGCCG- -5'
26046 5' -53 NC_005342.2 + 41381 0.66 0.841272
Target:  5'- gCGGcGCugGGCG-GCGcGccgUGGCGGCg -3'
miRNA:   3'- -GCCaUGugUUGCaCGC-Caa-GCUGCCG- -5'
26046 5' -53 NC_005342.2 + 29566 0.66 0.841272
Target:  5'- uGGUcauuCGCGGCGaagcgcgcGCGGUagUCGuCGGCg -3'
miRNA:   3'- gCCAu---GUGUUGCa-------CGCCA--AGCuGCCG- -5'
26046 5' -53 NC_005342.2 + 2395 0.66 0.841272
Target:  5'- -cGUACagcgGCAACGUGCcuuGGUaCGgcGCGGCg -3'
miRNA:   3'- gcCAUG----UGUUGCACG---CCAaGC--UGCCG- -5'
26046 5' -53 NC_005342.2 + 103 0.66 0.840388
Target:  5'- gCGGUGCGC-GCGccCGGUugccgccugcgccUCGuCGGCa -3'
miRNA:   3'- -GCCAUGUGuUGCacGCCA-------------AGCuGCCG- -5'
26046 5' -53 NC_005342.2 + 3255 0.66 0.833236
Target:  5'- uGGUAgGCAuacgcccuuucuccuUGUGCGcg-CGGCGGCg -3'
miRNA:   3'- gCCAUgUGUu--------------GCACGCcaaGCUGCCG- -5'
26046 5' -53 NC_005342.2 + 17668 0.66 0.832332
Target:  5'- gCGGU---CGAUGUcGCGGUguUCGGCuGGCa -3'
miRNA:   3'- -GCCAuguGUUGCA-CGCCA--AGCUG-CCG- -5'
26046 5' -53 NC_005342.2 + 13992 0.66 0.832332
Target:  5'- aCGG-ACACAugG-GCGucaaGUgcgacCGGCGGCg -3'
miRNA:   3'- -GCCaUGUGUugCaCGC----CAa----GCUGCCG- -5'
26046 5' -53 NC_005342.2 + 44095 0.66 0.832332
Target:  5'- aGGUGCGCugcuCG-GCGGcgCGcgcucgcuacaACGGCu -3'
miRNA:   3'- gCCAUGUGuu--GCaCGCCaaGC-----------UGCCG- -5'
26046 5' -53 NC_005342.2 + 19828 0.66 0.832332
Target:  5'- gCGGcGCGCAguacggaaACGUGCGcGUugagauuuUCGGCGuGCc -3'
miRNA:   3'- -GCCaUGUGU--------UGCACGC-CA--------AGCUGC-CG- -5'
26046 5' -53 NC_005342.2 + 14382 0.66 0.832332
Target:  5'- uCGGcUGCAgCAGCGUG-GGUuauUCGAgacaaucuCGGCg -3'
miRNA:   3'- -GCC-AUGU-GUUGCACgCCA---AGCU--------GCCG- -5'
26046 5' -53 NC_005342.2 + 4330 0.66 0.832332
Target:  5'- uCGGUGCGCuACGUG-GcGUUUGGuCGcGCa -3'
miRNA:   3'- -GCCAUGUGuUGCACgC-CAAGCU-GC-CG- -5'
26046 5' -53 NC_005342.2 + 7571 0.66 0.831427
Target:  5'- gCGGU-CGCGA-GUGCGccgaacaGUUCGuCGGCc -3'
miRNA:   3'- -GCCAuGUGUUgCACGC-------CAAGCuGCCG- -5'
26046 5' -53 NC_005342.2 + 13795 0.66 0.823178
Target:  5'- aGGcGCAgCGACGgcgaCGGUUCGGCgacgGGCg -3'
miRNA:   3'- gCCaUGU-GUUGCac--GCCAAGCUG----CCG- -5'
26046 5' -53 NC_005342.2 + 3876 0.66 0.823178
Target:  5'- uGGUGuCGuggUAGCGccagGCGGcagCGGCGGCa -3'
miRNA:   3'- gCCAU-GU---GUUGCa---CGCCaa-GCUGCCG- -5'
26046 5' -53 NC_005342.2 + 10070 0.66 0.823178
Target:  5'- gCGGccauUGCgaGCGGCGUGCcaaGaUCGGCGGCc -3'
miRNA:   3'- -GCC----AUG--UGUUGCACGc--CaAGCUGCCG- -5'
26046 5' -53 NC_005342.2 + 12782 0.66 0.823178
Target:  5'- aCGGUGC-CGACGuUGaCGGUcaCGACcGCa -3'
miRNA:   3'- -GCCAUGuGUUGC-AC-GCCAa-GCUGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.