miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26047 3' -57.4 NC_005342.2 + 3558 0.66 0.580086
Target:  5'- cGCCUGggcGGCCUCGAcgucgacaccaaugCCGcg-CGCGUUg -3'
miRNA:   3'- -UGGAC---CCGGAGCUa-------------GGCuuaGCGCAG- -5'
26047 3' -57.4 NC_005342.2 + 22756 0.66 0.543498
Target:  5'- ---cGGGCgUCGAcgUCGAGUCGCG-Ca -3'
miRNA:   3'- uggaCCCGgAGCUa-GGCUUAGCGCaG- -5'
26047 3' -57.4 NC_005342.2 + 10901 0.66 0.532875
Target:  5'- aGCCaGGGCgacgcaGAUUCGAG-CGCGUCg -3'
miRNA:   3'- -UGGaCCCGgag---CUAGGCUUaGCGCAG- -5'
26047 3' -57.4 NC_005342.2 + 10421 0.67 0.522327
Target:  5'- gUCUGGuaCUCGAUCgCGAcgCGCuUCg -3'
miRNA:   3'- uGGACCcgGAGCUAG-GCUuaGCGcAG- -5'
26047 3' -57.4 NC_005342.2 + 45912 0.68 0.460955
Target:  5'- -gCUGGGCgcguCUCGcgCCGGAUCaGCGcCa -3'
miRNA:   3'- ugGACCCG----GAGCuaGGCUUAG-CGCaG- -5'
26047 3' -57.4 NC_005342.2 + 17144 0.69 0.376678
Target:  5'- cGCCgcugacGGGCCagGcgCCGAAccugcaggcgcUCGCGUCg -3'
miRNA:   3'- -UGGa-----CCCGGagCuaGGCUU-----------AGCGCAG- -5'
26047 3' -57.4 NC_005342.2 + 12842 0.7 0.342703
Target:  5'- uCCUGGGCCUgGGcCUGcagUGCGUCg -3'
miRNA:   3'- uGGACCCGGAgCUaGGCuuaGCGCAG- -5'
26047 3' -57.4 NC_005342.2 + 10384 0.7 0.334561
Target:  5'- gGCCUcGGG-CUCGAgUCCGGAcgcgaUCGCGUUc -3'
miRNA:   3'- -UGGA-CCCgGAGCU-AGGCUU-----AGCGCAG- -5'
26047 3' -57.4 NC_005342.2 + 28204 0.72 0.24794
Target:  5'- uCCUGGuuGCCUUGcgcGUCCGGG-CGCGUCa -3'
miRNA:   3'- uGGACC--CGGAGC---UAGGCUUaGCGCAG- -5'
26047 3' -57.4 NC_005342.2 + 5130 0.74 0.190682
Target:  5'- uCCUGGucgagcguuGCCUCGcgCCGAuacucguugAUCGCGUCu -3'
miRNA:   3'- uGGACC---------CGGAGCuaGGCU---------UAGCGCAG- -5'
26047 3' -57.4 NC_005342.2 + 37867 1.09 0.000548
Target:  5'- gACCUGGGCCUCGAUCCGAAUCGCGUCu -3'
miRNA:   3'- -UGGACCCGGAGCUAGGCUUAGCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.