miRNA display CGI


Results 1 - 20 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26047 5' -58.7 NC_005342.2 + 4590 0.66 0.538102
Target:  5'- uUGuuGCGAUCCugguggugcaGGCCGGacGCaCGGGCc -3'
miRNA:   3'- cAUggCGCUAGG----------CUGGCU--CGaGCCCG- -5'
26047 5' -58.7 NC_005342.2 + 20550 0.66 0.538102
Target:  5'- -gGCCGCGccgCUGAUCGucGGCgcgUCGGGUc -3'
miRNA:   3'- caUGGCGCua-GGCUGGC--UCG---AGCCCG- -5'
26047 5' -58.7 NC_005342.2 + 2450 0.66 0.534973
Target:  5'- -aGCCGCGuuguUCgUGACgaucgacgccgccuCGAGgUCGGGCg -3'
miRNA:   3'- caUGGCGCu---AG-GCUG--------------GCUCgAGCCCG- -5'
26047 5' -58.7 NC_005342.2 + 34088 0.66 0.527698
Target:  5'- -cGCCGCGcagcccgugCCGGCCGAcuucGCgCGGcGCg -3'
miRNA:   3'- caUGGCGCua-------GGCUGGCU----CGaGCC-CG- -5'
26047 5' -58.7 NC_005342.2 + 8969 0.66 0.527698
Target:  5'- -aACCuGCGAUCgCGgcgcgugcgccuGCCGGccGCUCGGGg -3'
miRNA:   3'- caUGG-CGCUAG-GC------------UGGCU--CGAGCCCg -5'
26047 5' -58.7 NC_005342.2 + 3078 0.66 0.527698
Target:  5'- -aAgCGCGGccaguaUCgGGCCGAcUUCGGGCg -3'
miRNA:   3'- caUgGCGCU------AGgCUGGCUcGAGCCCG- -5'
26047 5' -58.7 NC_005342.2 + 8968 0.66 0.51737
Target:  5'- -gGCgGCGA-CCGACgCGcGUUCGcGGCu -3'
miRNA:   3'- caUGgCGCUaGGCUG-GCuCGAGC-CCG- -5'
26047 5' -58.7 NC_005342.2 + 17101 0.66 0.51737
Target:  5'- -gGCgGCGAcgcgUUCG-CCGGGCUCGcGCg -3'
miRNA:   3'- caUGgCGCU----AGGCuGGCUCGAGCcCG- -5'
26047 5' -58.7 NC_005342.2 + 10222 0.66 0.51737
Target:  5'- gGUAUCGaacgGGUCgGcgcacuggaaGCCGAGCgacgCGGGCa -3'
miRNA:   3'- -CAUGGCg---CUAGgC----------UGGCUCGa---GCCCG- -5'
26047 5' -58.7 NC_005342.2 + 28482 0.66 0.51737
Target:  5'- -cGCCGCG--UCGACCGcgcGGgUCGcGGCg -3'
miRNA:   3'- caUGGCGCuaGGCUGGC---UCgAGC-CCG- -5'
26047 5' -58.7 NC_005342.2 + 19276 0.66 0.504066
Target:  5'- uUGCCGCG-UUCGACCGcGUgaacaacgcgugccUCGGcGCg -3'
miRNA:   3'- cAUGGCGCuAGGCUGGCuCG--------------AGCC-CG- -5'
26047 5' -58.7 NC_005342.2 + 8587 0.66 0.496964
Target:  5'- --uUCGCGAUgcacgaagCCGAugcgcgacgUCGAGCUCGGcGCg -3'
miRNA:   3'- cauGGCGCUA--------GGCU---------GGCUCGAGCC-CG- -5'
26047 5' -58.7 NC_005342.2 + 20156 0.66 0.496964
Target:  5'- -aGCCuacuCGG-CCG-CCG-GCUCGGGCg -3'
miRNA:   3'- caUGGc---GCUaGGCuGGCuCGAGCCCG- -5'
26047 5' -58.7 NC_005342.2 + 5511 0.66 0.496964
Target:  5'- aUGCCGUGG-CCGGCgacGGCUUGGcGCg -3'
miRNA:   3'- cAUGGCGCUaGGCUGgc-UCGAGCC-CG- -5'
26047 5' -58.7 NC_005342.2 + 45414 0.66 0.496964
Target:  5'- -gGCCGUGAUugCCGAUCGucucgcGUUCGcGGCc -3'
miRNA:   3'- caUGGCGCUA--GGCUGGCu-----CGAGC-CCG- -5'
26047 5' -58.7 NC_005342.2 + 17743 0.66 0.486897
Target:  5'- -aGCC-UGGU-CGGCCGcacGCUCGGGCu -3'
miRNA:   3'- caUGGcGCUAgGCUGGCu--CGAGCCCG- -5'
26047 5' -58.7 NC_005342.2 + 30203 0.67 0.476928
Target:  5'- uUACCGCGcggcgCCGGCUGAauGCUUGcGCa -3'
miRNA:   3'- cAUGGCGCua---GGCUGGCU--CGAGCcCG- -5'
26047 5' -58.7 NC_005342.2 + 47299 0.67 0.467061
Target:  5'- -gAUCGCGcUC--ACCGAGCaCGGGCa -3'
miRNA:   3'- caUGGCGCuAGgcUGGCUCGaGCCCG- -5'
26047 5' -58.7 NC_005342.2 + 2633 0.67 0.4573
Target:  5'- uUGuuGCGA-CCGACCGGcaucacgaucucGCgacCGGGCu -3'
miRNA:   3'- cAUggCGCUaGGCUGGCU------------CGa--GCCCG- -5'
26047 5' -58.7 NC_005342.2 + 24789 0.67 0.4573
Target:  5'- -aACgGCGcaCCGACCGAcGUgaCGGGCg -3'
miRNA:   3'- caUGgCGCuaGGCUGGCU-CGa-GCCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.