miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26048 3' -56.3 NC_005342.2 + 180 0.66 0.653717
Target:  5'- aGCGCCCaacacgccaGAGCGCGCGGgcaaGCCa- -3'
miRNA:   3'- -CGCGGGcua------UUUGCGCGCUac--CGGca -5'
26048 3' -56.3 NC_005342.2 + 19739 0.66 0.653717
Target:  5'- gGCGCcgcugCCGuc-AACGaCGCGAUcGGCCGc -3'
miRNA:   3'- -CGCG-----GGCuauUUGC-GCGCUA-CCGGCa -5'
26048 3' -56.3 NC_005342.2 + 3585 0.66 0.653717
Target:  5'- uCGCCCaGUcGGGCGCcUGcgGGCCGUa -3'
miRNA:   3'- cGCGGGcUA-UUUGCGcGCuaCCGGCA- -5'
26048 3' -56.3 NC_005342.2 + 45243 0.66 0.653717
Target:  5'- gGCGCCCcgcauucGAGCG-GUGGUGGUCGc -3'
miRNA:   3'- -CGCGGGcua----UUUGCgCGCUACCGGCa -5'
26048 3' -56.3 NC_005342.2 + 22888 0.66 0.653717
Target:  5'- gGCGCUCGugacGAGCagaaGCGCGGUGcuGCCGc -3'
miRNA:   3'- -CGCGGGCua--UUUG----CGCGCUAC--CGGCa -5'
26048 3' -56.3 NC_005342.2 + 8917 0.66 0.64713
Target:  5'- cGCGCCgGcgcuguccaucGCGUGCGcgGGCUGg -3'
miRNA:   3'- -CGCGGgCuauu-------UGCGCGCuaCCGGCa -5'
26048 3' -56.3 NC_005342.2 + 44257 0.66 0.642736
Target:  5'- cCGCCCGG-GggUGCGCGA-GGCg-- -3'
miRNA:   3'- cGCGGGCUaUuuGCGCGCUaCCGgca -5'
26048 3' -56.3 NC_005342.2 + 28218 0.66 0.631746
Target:  5'- cGCGUCCGG---GCGCGUcacGGUGaCCGUg -3'
miRNA:   3'- -CGCGGGCUauuUGCGCG---CUACcGGCA- -5'
26048 3' -56.3 NC_005342.2 + 41600 0.66 0.620756
Target:  5'- -aGCCCGAauucgaccuGCGCGUGAUucugGGCCu- -3'
miRNA:   3'- cgCGGGCUauu------UGCGCGCUA----CCGGca -5'
26048 3' -56.3 NC_005342.2 + 18881 0.66 0.620756
Target:  5'- gGCGCCCa--GAACGCauCGAaGGCCGc -3'
miRNA:   3'- -CGCGGGcuaUUUGCGc-GCUaCCGGCa -5'
26048 3' -56.3 NC_005342.2 + 42385 0.66 0.620756
Target:  5'- -gGCCUGAacguGCGCaugccCGAUGGCCGc -3'
miRNA:   3'- cgCGGGCUauu-UGCGc----GCUACCGGCa -5'
26048 3' -56.3 NC_005342.2 + 34633 0.66 0.620756
Target:  5'- cGCGCCCGuacacCGUGCcGAaagGGUCGUu -3'
miRNA:   3'- -CGCGGGCuauuuGCGCG-CUa--CCGGCA- -5'
26048 3' -56.3 NC_005342.2 + 14296 0.66 0.61746
Target:  5'- gGCGCCguucgccgcuucuuCGAUGuaGACGCGCGAcacGGCgGc -3'
miRNA:   3'- -CGCGG--------------GCUAU--UUGCGCGCUa--CCGgCa -5'
26048 3' -56.3 NC_005342.2 + 44880 0.66 0.614165
Target:  5'- -gGCCCGAUAcuggccgcgcuugcuGAUGCGCGcgGcaGCUGUu -3'
miRNA:   3'- cgCGGGCUAU---------------UUGCGCGCuaC--CGGCA- -5'
26048 3' -56.3 NC_005342.2 + 28040 0.66 0.609775
Target:  5'- cGCGCUcgucguCGAUGAugcggacgGCGCG-GAUGGCCc- -3'
miRNA:   3'- -CGCGG------GCUAUU--------UGCGCgCUACCGGca -5'
26048 3' -56.3 NC_005342.2 + 11306 0.66 0.609775
Target:  5'- cGCGCgCGAUGAagGCgGCGCGGUucGUCGUc -3'
miRNA:   3'- -CGCGgGCUAUU--UG-CGCGCUAc-CGGCA- -5'
26048 3' -56.3 NC_005342.2 + 37384 0.66 0.609775
Target:  5'- cGCGCCCGAcc--CGCuCGucGGCCGg -3'
miRNA:   3'- -CGCGGGCUauuuGCGcGCuaCCGGCa -5'
26048 3' -56.3 NC_005342.2 + 41320 0.66 0.598814
Target:  5'- cGCGCCUGcucGAGCGCGcCGAgcgcgcuGCCGa -3'
miRNA:   3'- -CGCGGGCua-UUUGCGC-GCUac-----CGGCa -5'
26048 3' -56.3 NC_005342.2 + 26383 0.67 0.587882
Target:  5'- gGCGUCgCG-UAAGCGuUGCuguccaGAUGGCCGUa -3'
miRNA:   3'- -CGCGG-GCuAUUUGC-GCG------CUACCGGCA- -5'
26048 3' -56.3 NC_005342.2 + 17621 0.67 0.587882
Target:  5'- cGCGCCCG------GUGCcGUGGCCGa -3'
miRNA:   3'- -CGCGGGCuauuugCGCGcUACCGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.