miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26048 5' -50.5 NC_005342.2 + 16004 0.66 0.920954
Target:  5'- uCGGU-UGCAGGUCuGCCAUgca-UGCg -3'
miRNA:   3'- -GCUAuACGUCCAG-CGGUAaaugGCGg -5'
26048 5' -50.5 NC_005342.2 + 33610 0.66 0.920954
Target:  5'- aGcgGUGC-GGUUGCCGUguccaaucgAUUGCCg -3'
miRNA:   3'- gCuaUACGuCCAGCGGUAaa-------UGGCGG- -5'
26048 5' -50.5 NC_005342.2 + 1864 0.66 0.914556
Target:  5'- gGAUugGCgGGGUCGCCGaucaggaagUACCaGCCa -3'
miRNA:   3'- gCUAuaCG-UCCAGCGGUaa-------AUGG-CGG- -5'
26048 5' -50.5 NC_005342.2 + 39290 0.66 0.90786
Target:  5'- aCGGUcgGCAcGuUCGCCGUgcugaaCGCCg -3'
miRNA:   3'- -GCUAuaCGUcC-AGCGGUAaaug--GCGG- -5'
26048 5' -50.5 NC_005342.2 + 35014 0.66 0.90786
Target:  5'- aGGaAUGguGGcCGCCGccgUUACUGCa -3'
miRNA:   3'- gCUaUACguCCaGCGGUa--AAUGGCGg -5'
26048 5' -50.5 NC_005342.2 + 30932 0.66 0.900869
Target:  5'- cCGGUugucAUGCcGGUCGCgAcg-GCCGCg -3'
miRNA:   3'- -GCUA----UACGuCCAGCGgUaaaUGGCGg -5'
26048 5' -50.5 NC_005342.2 + 12109 0.66 0.900869
Target:  5'- aGGU-UGCGccGGUCGCgCAg--GCCGUCg -3'
miRNA:   3'- gCUAuACGU--CCAGCG-GUaaaUGGCGG- -5'
26048 5' -50.5 NC_005342.2 + 1274 0.66 0.900869
Target:  5'- uCGAUuauUGCuuGUCGUCGgcgcgcGCCGCCu -3'
miRNA:   3'- -GCUAu--ACGucCAGCGGUaaa---UGGCGG- -5'
26048 5' -50.5 NC_005342.2 + 18845 0.66 0.893587
Target:  5'- -aGUAcGCA-GUUGCCGUgcgcaacgcaUUGCCGCCg -3'
miRNA:   3'- gcUAUaCGUcCAGCGGUA----------AAUGGCGG- -5'
26048 5' -50.5 NC_005342.2 + 29699 0.67 0.886787
Target:  5'- aGGUGUGCAGGguucugcggauucaGCagcgUGCCGUCg -3'
miRNA:   3'- gCUAUACGUCCag------------CGguaaAUGGCGG- -5'
26048 5' -50.5 NC_005342.2 + 20946 0.67 0.870041
Target:  5'- aCGAUcgcGUAGGuUCGUCGaugUGCUGCCg -3'
miRNA:   3'- -GCUAua-CGUCC-AGCGGUaa-AUGGCGG- -5'
26048 5' -50.5 NC_005342.2 + 35685 0.67 0.870041
Target:  5'- -----cGCAGGaCGCCGcaaugcgcGCCGCCg -3'
miRNA:   3'- gcuauaCGUCCaGCGGUaaa-----UGGCGG- -5'
26048 5' -50.5 NC_005342.2 + 22816 0.67 0.861647
Target:  5'- uCGGUGguaucggGCAGGcCGCgaaCGUgcgcGCCGCCg -3'
miRNA:   3'- -GCUAUa------CGUCCaGCG---GUAaa--UGGCGG- -5'
26048 5' -50.5 NC_005342.2 + 2261 0.67 0.852994
Target:  5'- -cGUcgGCAGGUCgugcGCCGUggccgGCaCGCCc -3'
miRNA:   3'- gcUAuaCGUCCAG----CGGUAaa---UG-GCGG- -5'
26048 5' -50.5 NC_005342.2 + 234 0.68 0.834945
Target:  5'- uCGAUGU---GGUCGUCAc--GCCGCCg -3'
miRNA:   3'- -GCUAUAcguCCAGCGGUaaaUGGCGG- -5'
26048 5' -50.5 NC_005342.2 + 8367 0.68 0.829346
Target:  5'- uGAggAUGUAGcccgugucgagcaacGUCGCCGauacggUGCCGCCg -3'
miRNA:   3'- gCUa-UACGUC---------------CAGCGGUaa----AUGGCGG- -5'
26048 5' -50.5 NC_005342.2 + 8741 0.68 0.815972
Target:  5'- cCGAUcgGCGuGUCGUCcgUUAC-GCCg -3'
miRNA:   3'- -GCUAuaCGUcCAGCGGuaAAUGgCGG- -5'
26048 5' -50.5 NC_005342.2 + 44058 0.68 0.806166
Target:  5'- cCGGUcgGCcuGcCGCCGc-UGCCGCCu -3'
miRNA:   3'- -GCUAuaCGucCaGCGGUaaAUGGCGG- -5'
26048 5' -50.5 NC_005342.2 + 14285 0.69 0.796161
Target:  5'- uCGAUcaGCGcGG-CGCCGUUcGCCGCUu -3'
miRNA:   3'- -GCUAuaCGU-CCaGCGGUAAaUGGCGG- -5'
26048 5' -50.5 NC_005342.2 + 13478 0.69 0.790069
Target:  5'- uGAUcUGCuucagcuGGUCGCCguccgacgugcucgcGgcgUUGCCGCCg -3'
miRNA:   3'- gCUAuACGu------CCAGCGG---------------Ua--AAUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.