miRNA display CGI


Results 1 - 20 of 40 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26048 5' -50.5 NC_005342.2 + 37460 1.15 0.001155
Target:  5'- aCGAUAUGCAGGUCGCCAUUUACCGCCg -3'
miRNA:   3'- -GCUAUACGUCCAGCGGUAAAUGGCGG- -5'
26048 5' -50.5 NC_005342.2 + 9904 0.79 0.270057
Target:  5'- aCGA---GCAGGUCGCCGcgcaggugUUUGCCGUCg -3'
miRNA:   3'- -GCUauaCGUCCAGCGGU--------AAAUGGCGG- -5'
26048 5' -50.5 NC_005342.2 + 2771 0.76 0.404396
Target:  5'- uCGGgcgGCAGGUggaCGCCGUaguugGCCGCCa -3'
miRNA:   3'- -GCUauaCGUCCA---GCGGUAaa---UGGCGG- -5'
26048 5' -50.5 NC_005342.2 + 32467 0.76 0.414081
Target:  5'- -----cGCAGGUCGCU----GCCGCCg -3'
miRNA:   3'- gcuauaCGUCCAGCGGuaaaUGGCGG- -5'
26048 5' -50.5 NC_005342.2 + 38937 0.75 0.44093
Target:  5'- uCGAcgUGUcGCAGGUCGCCAaaggcagcgagcgcGCCGCCu -3'
miRNA:   3'- -GCU--AUA-CGUCCAGCGGUaaa-----------UGGCGG- -5'
26048 5' -50.5 NC_005342.2 + 26674 0.75 0.46874
Target:  5'- cCGAUAgcguCAGGUCGCCAggUGuauggaugucgaugcCCGCCg -3'
miRNA:   3'- -GCUAUac--GUCCAGCGGUaaAU---------------GGCGG- -5'
26048 5' -50.5 NC_005342.2 + 9442 0.74 0.507158
Target:  5'- ---aGUGCGGG-CGCCGcaccGCCGCCg -3'
miRNA:   3'- gcuaUACGUCCaGCGGUaaa-UGGCGG- -5'
26048 5' -50.5 NC_005342.2 + 27709 0.74 0.51151
Target:  5'- uCGAUGUGCGGcgcgaucguaggccaGUCGCgGUcgAUCGCCg -3'
miRNA:   3'- -GCUAUACGUC---------------CAGCGgUAaaUGGCGG- -5'
26048 5' -50.5 NC_005342.2 + 7374 0.72 0.585205
Target:  5'- -----cGCAGGUCGCCGUgu-CCuuGCCu -3'
miRNA:   3'- gcuauaCGUCCAGCGGUAaauGG--CGG- -5'
26048 5' -50.5 NC_005342.2 + 4041 0.72 0.596595
Target:  5'- aGGUcgGC-GGUCGCCAUgccggGCaGCCg -3'
miRNA:   3'- gCUAuaCGuCCAGCGGUAaa---UGgCGG- -5'
26048 5' -50.5 NC_005342.2 + 36268 0.72 0.608017
Target:  5'- -----cGCAGGaCGCCAgcacGCCGCCc -3'
miRNA:   3'- gcuauaCGUCCaGCGGUaaa-UGGCGG- -5'
26048 5' -50.5 NC_005342.2 + 23149 0.72 0.63092
Target:  5'- ---cGUGCAGGUCGCgCAgcUACCGa- -3'
miRNA:   3'- gcuaUACGUCCAGCG-GUaaAUGGCgg -5'
26048 5' -50.5 NC_005342.2 + 1973 0.71 0.642379
Target:  5'- uCGGUGUaaucgGGGUCGCCGUUcgaaUGCgCGCCa -3'
miRNA:   3'- -GCUAUAcg---UCCAGCGGUAA----AUG-GCGG- -5'
26048 5' -50.5 NC_005342.2 + 45310 0.71 0.642379
Target:  5'- gCGAcgcUGCAGGcUGCCGgugUcGCCGCCg -3'
miRNA:   3'- -GCUau-ACGUCCaGCGGUa--AaUGGCGG- -5'
26048 5' -50.5 NC_005342.2 + 14360 0.71 0.676647
Target:  5'- gCGAUcgccUGCGcGGUCGCCAUgaaggcgaguUUcucgcGCCGCCa -3'
miRNA:   3'- -GCUAu---ACGU-CCAGCGGUA----------AA-----UGGCGG- -5'
26048 5' -50.5 NC_005342.2 + 28456 0.7 0.699284
Target:  5'- -----cGCAGGUCgGCCAgcaACUGCCc -3'
miRNA:   3'- gcuauaCGUCCAG-CGGUaaaUGGCGG- -5'
26048 5' -50.5 NC_005342.2 + 2720 0.7 0.732676
Target:  5'- uCGA-AUGCGGGgCGCCccgc-CCGCCa -3'
miRNA:   3'- -GCUaUACGUCCaGCGGuaaauGGCGG- -5'
26048 5' -50.5 NC_005342.2 + 101 0.69 0.754413
Target:  5'- gCGcgGUGCGcG-CGCCcggUUGCCGCCu -3'
miRNA:   3'- -GCuaUACGUcCaGCGGua-AAUGGCGG- -5'
26048 5' -50.5 NC_005342.2 + 25506 0.69 0.765085
Target:  5'- aCGAgccucggGCAGGUCGCCA----UCGCg -3'
miRNA:   3'- -GCUaua----CGUCCAGCGGUaaauGGCGg -5'
26048 5' -50.5 NC_005342.2 + 46056 0.69 0.785972
Target:  5'- aCGA---GCGGG-CGCCGUUaugcGCCGCUg -3'
miRNA:   3'- -GCUauaCGUCCaGCGGUAAa---UGGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.