miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26049 3' -58.8 NC_005342.2 + 44436 0.65 0.526637
Target:  5'- cGCUGCGCGGcaccGCGuugaucccgcuuUACGCCGaUCAGc -3'
miRNA:   3'- -CGGCGCGCCa---UGCu-----------AUGCGGC-GGUCa -5'
26049 3' -58.8 NC_005342.2 + 29069 0.65 0.525598
Target:  5'- aGCCGCGCGGcUGCuuaacacgcaccucGAgcggcuCGuuGCCGGc -3'
miRNA:   3'- -CGGCGCGCC-AUG--------------CUau----GCggCGGUCa -5'
26049 3' -58.8 NC_005342.2 + 38090 0.66 0.518346
Target:  5'- uGUCGCGUgucgGGUGCGccgGCGUgaCGCCGGc -3'
miRNA:   3'- -CGGCGCG----CCAUGCua-UGCG--GCGGUCa -5'
26049 3' -58.8 NC_005342.2 + 44891 0.66 0.518346
Target:  5'- gGCCGCGCu-UGCuGAUGCGCgCGgCAGc -3'
miRNA:   3'- -CGGCGCGccAUG-CUAUGCG-GCgGUCa -5'
26049 3' -58.8 NC_005342.2 + 25935 0.66 0.508056
Target:  5'- -gCGCGCGGcguCGAgccgGCgGCCAGUa -3'
miRNA:   3'- cgGCGCGCCau-GCUaug-CGgCGGUCA- -5'
26049 3' -58.8 NC_005342.2 + 1981 0.66 0.508056
Target:  5'- cCCGCGCGG-AUGAUGCcgacgucacgGCCGCg--- -3'
miRNA:   3'- cGGCGCGCCaUGCUAUG----------CGGCGguca -5'
26049 3' -58.8 NC_005342.2 + 14811 0.66 0.508056
Target:  5'- uGCCGgacuCGCGGcUACGGUuCGgCGCgCAGUc -3'
miRNA:   3'- -CGGC----GCGCC-AUGCUAuGCgGCG-GUCA- -5'
26049 3' -58.8 NC_005342.2 + 29767 0.66 0.497854
Target:  5'- uGCCGCGCGcacgACGA-GCGCaucacccggcaCGCCGGc -3'
miRNA:   3'- -CGGCGCGCca--UGCUaUGCG-----------GCGGUCa -5'
26049 3' -58.8 NC_005342.2 + 38573 0.66 0.497854
Target:  5'- aCCGgGCGccaUACGA-ACGCCGCCcGUc -3'
miRNA:   3'- cGGCgCGCc--AUGCUaUGCGGCGGuCA- -5'
26049 3' -58.8 NC_005342.2 + 27215 0.66 0.49481
Target:  5'- aGCCGCGUcg-GCGAUguccggcagcgcgcGCGCCGUCAu- -3'
miRNA:   3'- -CGGCGCGccaUGCUA--------------UGCGGCGGUca -5'
26049 3' -58.8 NC_005342.2 + 596 0.66 0.487744
Target:  5'- cCCGacaGCGGgcCGG--UGCUGCCAGUg -3'
miRNA:   3'- cGGCg--CGCCauGCUauGCGGCGGUCA- -5'
26049 3' -58.8 NC_005342.2 + 8958 0.66 0.487744
Target:  5'- gGCCGUGCGcGgcgGCGAccgACGCgcguucgcggcuUGCCAGg -3'
miRNA:   3'- -CGGCGCGC-Ca--UGCUa--UGCG------------GCGGUCa -5'
26049 3' -58.8 NC_005342.2 + 11081 0.66 0.487744
Target:  5'- cGCCGCGC--UGCGggAUGCCGCa--- -3'
miRNA:   3'- -CGGCGCGccAUGCuaUGCGGCGguca -5'
26049 3' -58.8 NC_005342.2 + 22832 0.66 0.487744
Target:  5'- gGCCGCGaacGUGC---GCGCCGCCGu- -3'
miRNA:   3'- -CGGCGCgc-CAUGcuaUGCGGCGGUca -5'
26049 3' -58.8 NC_005342.2 + 33058 0.66 0.477732
Target:  5'- cGuuGCGCGaGaACGGcGCGCCGUCGu- -3'
miRNA:   3'- -CggCGCGC-CaUGCUaUGCGGCGGUca -5'
26049 3' -58.8 NC_005342.2 + 29529 0.67 0.467822
Target:  5'- cGCU-CGCGGUGuCGA--CGCCGCCGa- -3'
miRNA:   3'- -CGGcGCGCCAU-GCUauGCGGCGGUca -5'
26049 3' -58.8 NC_005342.2 + 3587 0.67 0.45802
Target:  5'- uGCCGCGCGcGU-UGAUGCGCaUGuCCAu- -3'
miRNA:   3'- -CGGCGCGC-CAuGCUAUGCG-GC-GGUca -5'
26049 3' -58.8 NC_005342.2 + 12488 0.67 0.45802
Target:  5'- gGCa-CGCGGUaucugcucugcuAUGGcACGCCGCCGGa -3'
miRNA:   3'- -CGgcGCGCCA------------UGCUaUGCGGCGGUCa -5'
26049 3' -58.8 NC_005342.2 + 26117 0.67 0.45802
Target:  5'- cGCCGCgucGCGGUAuuCGAUGggauUGCCGUCGa- -3'
miRNA:   3'- -CGGCG---CGCCAU--GCUAU----GCGGCGGUca -5'
26049 3' -58.8 NC_005342.2 + 19937 0.67 0.45802
Target:  5'- cGCCGgGCGG--CGAgcCGCCGUCGa- -3'
miRNA:   3'- -CGGCgCGCCauGCUauGCGGCGGUca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.