miRNA display CGI


Results 1 - 20 of 88 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26049 3' -58.8 NC_005342.2 + 19789 0.81 0.050664
Target:  5'- uGCCGCGCGuugaGUGCGAUGCGCUGCUg-- -3'
miRNA:   3'- -CGGCGCGC----CAUGCUAUGCGGCGGuca -5'
26049 3' -58.8 NC_005342.2 + 17763 0.69 0.349897
Target:  5'- cGCCGCGCGGUAau-UGCaaGCUGUUAGc -3'
miRNA:   3'- -CGGCGCGCCAUgcuAUG--CGGCGGUCa -5'
26049 3' -58.8 NC_005342.2 + 11607 0.68 0.366611
Target:  5'- -gCGCGCGaacGUGuCGAaguaGCGCUGCCAGUa -3'
miRNA:   3'- cgGCGCGC---CAU-GCUa---UGCGGCGGUCA- -5'
26049 3' -58.8 NC_005342.2 + 29069 0.65 0.525598
Target:  5'- aGCCGCGCGGcUGCuuaacacgcaccucGAgcggcuCGuuGCCGGc -3'
miRNA:   3'- -CGGCGCGCC-AUG--------------CUau----GCggCGGUCa -5'
26049 3' -58.8 NC_005342.2 + 10845 0.73 0.194764
Target:  5'- cGCCGCGCGGgaagaacgccggcGCGAcagucacuUGCGCCGacgaCAGUg -3'
miRNA:   3'- -CGGCGCGCCa------------UGCU--------AUGCGGCg---GUCA- -5'
26049 3' -58.8 NC_005342.2 + 44147 0.72 0.21287
Target:  5'- uGCCG-GCGcGUGCGAggcgcUugGCCuGCCGGUg -3'
miRNA:   3'- -CGGCgCGC-CAUGCU-----AugCGG-CGGUCA- -5'
26049 3' -58.8 NC_005342.2 + 18855 0.71 0.236004
Target:  5'- uGCCGUGCGcaACGcauUGCCGCCGGg -3'
miRNA:   3'- -CGGCGCGCcaUGCuauGCGGCGGUCa -5'
26049 3' -58.8 NC_005342.2 + 6319 0.71 0.26121
Target:  5'- aCCGCGCGauuuUACGAUGCGCCGgUAu- -3'
miRNA:   3'- cGGCGCGCc---AUGCUAUGCGGCgGUca -5'
26049 3' -58.8 NC_005342.2 + 2028 0.7 0.288566
Target:  5'- cCCGCGCGGUagaguGCGGUAUaGCCGUCc-- -3'
miRNA:   3'- cGGCGCGCCA-----UGCUAUG-CGGCGGuca -5'
26049 3' -58.8 NC_005342.2 + 27210 0.69 0.333732
Target:  5'- uUCGCGCGGUACau--CGCCGUCGu- -3'
miRNA:   3'- cGGCGCGCCAUGcuauGCGGCGGUca -5'
26049 3' -58.8 NC_005342.2 + 29527 0.69 0.318122
Target:  5'- aCCGgGCcGUugaugGCGAUcggcGCGCCGCCGGUc -3'
miRNA:   3'- cGGCgCGcCA-----UGCUA----UGCGGCGGUCA- -5'
26049 3' -58.8 NC_005342.2 + 2450 0.7 0.274615
Target:  5'- aGCCGCGuuGUucgugACGAUcgACGCCGCCu-- -3'
miRNA:   3'- -CGGCGCgcCA-----UGCUA--UGCGGCGGuca -5'
26049 3' -58.8 NC_005342.2 + 14365 0.81 0.050664
Target:  5'- cGCCuGCGCGGUcgccaugaagGCGAguuucucGCGCCGCCAGUc -3'
miRNA:   3'- -CGG-CGCGCCA----------UGCUa------UGCGGCGGUCA- -5'
26049 3' -58.8 NC_005342.2 + 36004 0.69 0.318122
Target:  5'- cCUGCGCcaUGCGAUacGCGCCGCCcgAGUa -3'
miRNA:   3'- cGGCGCGccAUGCUA--UGCGGCGG--UCA- -5'
26049 3' -58.8 NC_005342.2 + 47236 0.74 0.159109
Target:  5'- uGCCGCGCuGaACGAgGCGCCgGCCGGc -3'
miRNA:   3'- -CGGCGCGcCaUGCUaUGCGG-CGGUCa -5'
26049 3' -58.8 NC_005342.2 + 2607 0.71 0.267845
Target:  5'- aCCGCGCGGUucaucGCGCuCGCCGGc -3'
miRNA:   3'- cGGCGCGCCAugcuaUGCG-GCGGUCa -5'
26049 3' -58.8 NC_005342.2 + 223 0.69 0.318122
Target:  5'- cGCCGUGCcGUuCGAUguggucgucACGCCGCCGa- -3'
miRNA:   3'- -CGGCGCGcCAuGCUA---------UGCGGCGGUca -5'
26049 3' -58.8 NC_005342.2 + 4872 0.69 0.358186
Target:  5'- -gCGCGCGcUGCGAUaguGCGCCGUCGc- -3'
miRNA:   3'- cgGCGCGCcAUGCUA---UGCGGCGGUca -5'
26049 3' -58.8 NC_005342.2 + 16653 0.74 0.16344
Target:  5'- aCCGCGCGGUGCGGaaGCaCCGCCGc- -3'
miRNA:   3'- cGGCGCGCCAUGCUa-UGcGGCGGUca -5'
26049 3' -58.8 NC_005342.2 + 30955 0.72 0.218464
Target:  5'- gGCCGCGCGGcGCa--GCGCCGUCucGGUg -3'
miRNA:   3'- -CGGCGCGCCaUGcuaUGCGGCGG--UCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.