miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26049 5' -52.9 NC_005342.2 + 40546 0.66 0.840251
Target:  5'- gGGCCGUCucgugcagcucuGGgcgccgCGCGUCGAaggcaaggacACGGCGa -3'
miRNA:   3'- gCUGGCAG------------UUa-----GCGCAGCU----------UGUCGCa -5'
26049 5' -52.9 NC_005342.2 + 21660 0.66 0.840251
Target:  5'- uCGACCGgCuuUCGCaUCG-ACGGCGc -3'
miRNA:   3'- -GCUGGCaGuuAGCGcAGCuUGUCGCa -5'
26049 5' -52.9 NC_005342.2 + 44734 0.66 0.840251
Target:  5'- cCGGCCGcUCGAccgCGCGUgGcgcuGGCGGCGc -3'
miRNA:   3'- -GCUGGC-AGUUa--GCGCAgC----UUGUCGCa -5'
26049 5' -52.9 NC_005342.2 + 13316 0.66 0.83936
Target:  5'- aCGACCcuuucggcacgguGUaCGggCGCGgcaCGAGCGGCGUg -3'
miRNA:   3'- -GCUGG-------------CA-GUuaGCGCa--GCUUGUCGCA- -5'
26049 5' -52.9 NC_005342.2 + 2604 0.66 0.831241
Target:  5'- cCGACCGcgCGguucAUCGCGcUCGc-CGGCGUa -3'
miRNA:   3'- -GCUGGCa-GU----UAGCGC-AGCuuGUCGCA- -5'
26049 5' -52.9 NC_005342.2 + 5109 0.66 0.831241
Target:  5'- uCGuCCGUCAcgggCGagccgcccguguUGUCGAGCAGCGc -3'
miRNA:   3'- -GCuGGCAGUua--GC------------GCAGCUUGUCGCa -5'
26049 5' -52.9 NC_005342.2 + 28669 0.66 0.822016
Target:  5'- aCGGCCGUguGcUUGCucgCGAGCAGCa- -3'
miRNA:   3'- -GCUGGCAguU-AGCGca-GCUUGUCGca -5'
26049 5' -52.9 NC_005342.2 + 29462 0.66 0.822016
Target:  5'- gCGuCCGUCGG-CGUGcCGGcaGCGGCGg -3'
miRNA:   3'- -GCuGGCAGUUaGCGCaGCU--UGUCGCa -5'
26049 5' -52.9 NC_005342.2 + 18794 0.66 0.821081
Target:  5'- cCGcACCGUCGaaGUCGCGaUGAAaggcagcCAGCGg -3'
miRNA:   3'- -GC-UGGCAGU--UAGCGCaGCUU-------GUCGCa -5'
26049 5' -52.9 NC_005342.2 + 11054 0.66 0.812584
Target:  5'- -cACCGgcg--CGCGUCGugAGCGGCGUg -3'
miRNA:   3'- gcUGGCaguuaGCGCAGC--UUGUCGCA- -5'
26049 5' -52.9 NC_005342.2 + 25391 0.66 0.812584
Target:  5'- gCGaACCGUCcggcGAUCGCG-CuuGCAGUGUg -3'
miRNA:   3'- -GC-UGGCAG----UUAGCGCaGcuUGUCGCA- -5'
26049 5' -52.9 NC_005342.2 + 26259 0.66 0.812584
Target:  5'- aCGugCG-CAuagagCGCGUCGAGCuGCu- -3'
miRNA:   3'- -GCugGCaGUua---GCGCAGCUUGuCGca -5'
26049 5' -52.9 NC_005342.2 + 9340 0.66 0.812584
Target:  5'- uGGCCGUgcCGAUCaGCG-CGAaGCGGCGc -3'
miRNA:   3'- gCUGGCA--GUUAG-CGCaGCU-UGUCGCa -5'
26049 5' -52.9 NC_005342.2 + 26378 0.66 0.81163
Target:  5'- -uGCCGUCGGUCGUGauagcgcUUGGcuGCAGCGc -3'
miRNA:   3'- gcUGGCAGUUAGCGC-------AGCU--UGUCGCa -5'
26049 5' -52.9 NC_005342.2 + 38017 0.66 0.802957
Target:  5'- gCGACCGUgCA--CGCGgCGAcCGGCGa -3'
miRNA:   3'- -GCUGGCA-GUuaGCGCaGCUuGUCGCa -5'
26049 5' -52.9 NC_005342.2 + 23207 0.67 0.793147
Target:  5'- gCGAUCGUCGc-CGCGUucgUGAGCGGCu- -3'
miRNA:   3'- -GCUGGCAGUuaGCGCA---GCUUGUCGca -5'
26049 5' -52.9 NC_005342.2 + 30547 0.67 0.783162
Target:  5'- uCGACaccgCGUCGuagaaCGCGUCGAGCgccuGGCGg -3'
miRNA:   3'- -GCUG----GCAGUua---GCGCAGCUUG----UCGCa -5'
26049 5' -52.9 NC_005342.2 + 19353 0.67 0.783162
Target:  5'- --uUCGUCGAcaUCGCGcUCGAGCAGUu- -3'
miRNA:   3'- gcuGGCAGUU--AGCGC-AGCUUGUCGca -5'
26049 5' -52.9 NC_005342.2 + 18019 0.67 0.773017
Target:  5'- gCGGCgCGUCGAUCGa-UCaGGCGGCGg -3'
miRNA:   3'- -GCUG-GCAGUUAGCgcAGcUUGUCGCa -5'
26049 5' -52.9 NC_005342.2 + 37128 0.67 0.773017
Target:  5'- gCGG-CGUCAAgCGCGU--GACAGCGUa -3'
miRNA:   3'- -GCUgGCAGUUaGCGCAgcUUGUCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.