miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26049 5' -52.9 NC_005342.2 + 12642 0.74 0.391583
Target:  5'- uCGACgGgUCGAcCGCGcCGAACAGCGa -3'
miRNA:   3'- -GCUGgC-AGUUaGCGCaGCUUGUCGCa -5'
26049 5' -52.9 NC_005342.2 + 37099 0.68 0.717027
Target:  5'- gCGGCCGUCcucAUCGUccuacGUCGGcgcucgcgguuugcGCGGCGUg -3'
miRNA:   3'- -GCUGGCAGu--UAGCG-----CAGCU--------------UGUCGCA- -5'
26049 5' -52.9 NC_005342.2 + 21985 0.68 0.731054
Target:  5'- gGGCCGUUuucuUUGCGUCGGcgcgaauCAGCGc -3'
miRNA:   3'- gCUGGCAGuu--AGCGCAGCUu------GUCGCa -5'
26049 5' -52.9 NC_005342.2 + 44734 0.66 0.840251
Target:  5'- cCGGCCGcUCGAccgCGCGUgGcgcuGGCGGCGc -3'
miRNA:   3'- -GCUGGC-AGUUa--GCGCAgC----UUGUCGCa -5'
26049 5' -52.9 NC_005342.2 + 11593 0.72 0.459145
Target:  5'- cCGGCCGUCAcuUCGCGcgCGAAC-GUGUc -3'
miRNA:   3'- -GCUGGCAGUu-AGCGCa-GCUUGuCGCA- -5'
26049 5' -52.9 NC_005342.2 + 3653 0.72 0.479567
Target:  5'- gCGACgGUCugagccGUCGCGUCGuAGCuGCGg -3'
miRNA:   3'- -GCUGgCAGu-----UAGCGCAGC-UUGuCGCa -5'
26049 5' -52.9 NC_005342.2 + 30607 0.71 0.565132
Target:  5'- uCGACUgGUUGAaCGCGUCGAGC-GCGUc -3'
miRNA:   3'- -GCUGG-CAGUUaGCGCAGCUUGuCGCA- -5'
26049 5' -52.9 NC_005342.2 + 1588 0.7 0.576157
Target:  5'- uCGACCGcauccgggUCGAaaGCGUCGucgGCGGCGUa -3'
miRNA:   3'- -GCUGGC--------AGUUagCGCAGCu--UGUCGCA- -5'
26049 5' -52.9 NC_005342.2 + 11671 0.69 0.654144
Target:  5'- --uCCGUCGAcgcaGCGcCGGGCGGCGUg -3'
miRNA:   3'- gcuGGCAGUUag--CGCaGCUUGUCGCA- -5'
26049 5' -52.9 NC_005342.2 + 5032 0.68 0.709412
Target:  5'- uGGCCGacgUCGG-CGCGgcgcUGAACAGCGUc -3'
miRNA:   3'- gCUGGC---AGUUaGCGCa---GCUUGUCGCA- -5'
26049 5' -52.9 NC_005342.2 + 26969 0.69 0.665284
Target:  5'- aCGG-CGUCAuUCGUGuccguuucuUCGAGCAGCGg -3'
miRNA:   3'- -GCUgGCAGUuAGCGC---------AGCUUGUCGCa -5'
26049 5' -52.9 NC_005342.2 + 11072 0.69 0.654144
Target:  5'- uGAUCGUg---CGCGaCGAACAGCGg -3'
miRNA:   3'- gCUGGCAguuaGCGCaGCUUGUCGCa -5'
26049 5' -52.9 NC_005342.2 + 21516 0.73 0.410225
Target:  5'- -cACUGUCGAcgggCGCGUCGAAC-GCGUa -3'
miRNA:   3'- gcUGGCAGUUa---GCGCAGCUUGuCGCA- -5'
26049 5' -52.9 NC_005342.2 + 45573 0.69 0.676393
Target:  5'- uCGA-UGUCGAUCGUGUCGAAgAGauaGUg -3'
miRNA:   3'- -GCUgGCAGUUAGCGCAGCUUgUCg--CA- -5'
26049 5' -52.9 NC_005342.2 + 20561 0.73 0.429408
Target:  5'- uGAUCGUCGG-CGCGUCGggUcGCGc -3'
miRNA:   3'- gCUGGCAGUUaGCGCAGCuuGuCGCa -5'
26049 5' -52.9 NC_005342.2 + 15491 0.69 0.630694
Target:  5'- gCGGCgCGUCAAgCGCGauguuagcgggcaUCGAGCAGCc- -3'
miRNA:   3'- -GCUG-GCAGUUaGCGC-------------AGCUUGUCGca -5'
26049 5' -52.9 NC_005342.2 + 33093 0.68 0.687458
Target:  5'- -uGCUGccCGAUCGCGUaGAACGGCGa -3'
miRNA:   3'- gcUGGCa-GUUAGCGCAgCUUGUCGCa -5'
26049 5' -52.9 NC_005342.2 + 2760 0.68 0.728907
Target:  5'- aCGACCGUgAAgcgauugcgcagCGCGUCGua-GGCGa -3'
miRNA:   3'- -GCUGGCAgUUa-----------GCGCAGCuugUCGCa -5'
26049 5' -52.9 NC_005342.2 + 8143 0.73 0.449109
Target:  5'- uCGGCCGcgUCcAUCGCGUacucggUGAGCGGCGUc -3'
miRNA:   3'- -GCUGGC--AGuUAGCGCA------GCUUGUCGCA- -5'
26049 5' -52.9 NC_005342.2 + 28081 0.72 0.511001
Target:  5'- gCGAUCugGUUcAUCGUGUCGAGCGGCa- -3'
miRNA:   3'- -GCUGG--CAGuUAGCGCAGCUUGUCGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.