miRNA display CGI


Results 1 - 20 of 201 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26050 3' -56.3 NC_005342.2 + 33666 0.66 0.664998
Target:  5'- -aGACGGcACCGUGauGCC--CGUCGCg -3'
miRNA:   3'- ugCUGCU-UGGCGCggCGGaaGUAGCG- -5'
26050 3' -56.3 NC_005342.2 + 37949 0.66 0.664998
Target:  5'- --aGCGcGCCGCGCCGUUcgUCAaCGUg -3'
miRNA:   3'- ugcUGCuUGGCGCGGCGGa-AGUaGCG- -5'
26050 3' -56.3 NC_005342.2 + 14901 0.66 0.664998
Target:  5'- -gGACGAccGCCGagaG-CGCCUcuucagcauucuUCGUCGCg -3'
miRNA:   3'- ugCUGCU--UGGCg--CgGCGGA------------AGUAGCG- -5'
26050 3' -56.3 NC_005342.2 + 29575 0.66 0.664998
Target:  5'- nCGGCGAAgCGCGCgCGgUagUCGUCGg -3'
miRNA:   3'- uGCUGCUUgGCGCG-GCgGa-AGUAGCg -5'
26050 3' -56.3 NC_005342.2 + 14790 0.66 0.663907
Target:  5'- cCGGCGcGCCGCugccaauGCUGCCggacUCGCg -3'
miRNA:   3'- uGCUGCuUGGCG-------CGGCGGaaguAGCG- -5'
26050 3' -56.3 NC_005342.2 + 24938 0.66 0.663907
Target:  5'- cCGGagaAGCCGCGCCGCagucgagCUUCGaguugaUCGCg -3'
miRNA:   3'- uGCUgc-UUGGCGCGGCG-------GAAGU------AGCG- -5'
26050 3' -56.3 NC_005342.2 + 38776 0.66 0.654083
Target:  5'- gACGGCGAguaCGCGCgacucgugCGCCgugCGUCGg -3'
miRNA:   3'- -UGCUGCUug-GCGCG--------GCGGaa-GUAGCg -5'
26050 3' -56.3 NC_005342.2 + 11606 0.66 0.654083
Target:  5'- cGCGcGCGAACgugucgaaguaGCGCUGCCaguaGUCGCg -3'
miRNA:   3'- -UGC-UGCUUGg----------CGCGGCGGaag-UAGCG- -5'
26050 3' -56.3 NC_005342.2 + 41815 0.66 0.654083
Target:  5'- cGCGACGAGgCGUGUCGCgaggugCGCc -3'
miRNA:   3'- -UGCUGCUUgGCGCGGCGgaaguaGCG- -5'
26050 3' -56.3 NC_005342.2 + 47150 0.66 0.654083
Target:  5'- aGCGACGcGCagGCGaCCGCagcuaCGUCGCc -3'
miRNA:   3'- -UGCUGCuUGg-CGC-GGCGgaa--GUAGCG- -5'
26050 3' -56.3 NC_005342.2 + 22006 0.66 0.654083
Target:  5'- aGCGccGCGuACUG-GCCGCCggCAUCGa -3'
miRNA:   3'- -UGC--UGCuUGGCgCGGCGGaaGUAGCg -5'
26050 3' -56.3 NC_005342.2 + 44062 0.66 0.654083
Target:  5'- uCGGCcugccGCCGCuGCCGCCUgg--CGCu -3'
miRNA:   3'- uGCUGcu---UGGCG-CGGCGGAaguaGCG- -5'
26050 3' -56.3 NC_005342.2 + 2047 0.66 0.654083
Target:  5'- gGCG-CGAGaCGCGCCcaGCCcUCgGUCGCc -3'
miRNA:   3'- -UGCuGCUUgGCGCGG--CGGaAG-UAGCG- -5'
26050 3' -56.3 NC_005342.2 + 45072 0.66 0.654083
Target:  5'- uACGACG-GCCGCGCagcaCGUCUcugccaacaUCAgccUCGCc -3'
miRNA:   3'- -UGCUGCuUGGCGCG----GCGGA---------AGU---AGCG- -5'
26050 3' -56.3 NC_005342.2 + 28695 0.66 0.647524
Target:  5'- cGCGGCaaucAGCUGCgcgGCCGCCggaucggcgugugCGUCGCg -3'
miRNA:   3'- -UGCUGc---UUGGCG---CGGCGGaa-----------GUAGCG- -5'
26050 3' -56.3 NC_005342.2 + 38409 0.66 0.643149
Target:  5'- cGCGcUGAAauucCCGCaGCCGCCggCGcUCGCc -3'
miRNA:   3'- -UGCuGCUU----GGCG-CGGCGGaaGU-AGCG- -5'
26050 3' -56.3 NC_005342.2 + 29917 0.66 0.643149
Target:  5'- aGCGGCGGGCagcgcgaucagCGCuagaacucgGCCGgCUUCGUCGg -3'
miRNA:   3'- -UGCUGCUUG-----------GCG---------CGGCgGAAGUAGCg -5'
26050 3' -56.3 NC_005342.2 + 45856 0.66 0.643149
Target:  5'- aACGcCGAACUGCaGCgCGCCgaauUCGagGCg -3'
miRNA:   3'- -UGCuGCUUGGCG-CG-GCGGa---AGUagCG- -5'
26050 3' -56.3 NC_005342.2 + 41056 0.66 0.643149
Target:  5'- cUGGCGc-CCGCGCaCGCCUcaaaCGUgCGCa -3'
miRNA:   3'- uGCUGCuuGGCGCG-GCGGAa---GUA-GCG- -5'
26050 3' -56.3 NC_005342.2 + 11310 0.66 0.643149
Target:  5'- cGCGAUGAagGCgGCGCgGU--UCGUCGUc -3'
miRNA:   3'- -UGCUGCU--UGgCGCGgCGgaAGUAGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.