miRNA display CGI


Results 1 - 20 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26050 3' -56.3 NC_005342.2 + 14790 0.66 0.663907
Target:  5'- cCGGCGcGCCGCugccaauGCUGCCggacUCGCg -3'
miRNA:   3'- uGCUGCuUGGCG-------CGGCGGaaguAGCG- -5'
26050 3' -56.3 NC_005342.2 + 5239 0.66 0.632205
Target:  5'- -aGACGAaauaGCCaucggucgagaGCGCCGCCcgcUCGUcCGCc -3'
miRNA:   3'- ugCUGCU----UGG-----------CGCGGCGGa--AGUA-GCG- -5'
26050 3' -56.3 NC_005342.2 + 24244 0.66 0.62126
Target:  5'- cCGACGcAAcCCGCGCgaGCCa--AUCGCu -3'
miRNA:   3'- uGCUGC-UU-GGCGCGg-CGGaagUAGCG- -5'
26050 3' -56.3 NC_005342.2 + 494 0.66 0.62126
Target:  5'- cGCGACGuGCCgGCGagCGUgaacgCUUCGUCGUa -3'
miRNA:   3'- -UGCUGCuUGG-CGCg-GCG-----GAAGUAGCG- -5'
26050 3' -56.3 NC_005342.2 + 17547 0.66 0.610326
Target:  5'- -gGACGAAgUUGcCGCCGCCggCGgcggCGCg -3'
miRNA:   3'- ugCUGCUU-GGC-GCGGCGGaaGUa---GCG- -5'
26050 3' -56.3 NC_005342.2 + 14288 0.66 0.610326
Target:  5'- cGCGACGGGCaucacgGUGCCGUCUgg--CGUa -3'
miRNA:   3'- -UGCUGCUUGg-----CGCGGCGGAaguaGCG- -5'
26050 3' -56.3 NC_005342.2 + 27593 0.66 0.610326
Target:  5'- gACGuCGAAUagCGCGgCGCCUUC--UGCa -3'
miRNA:   3'- -UGCuGCUUG--GCGCgGCGGAAGuaGCG- -5'
26050 3' -56.3 NC_005342.2 + 2884 0.66 0.62126
Target:  5'- -aGACGuGCUGCGCgGCC---GUCGUa -3'
miRNA:   3'- ugCUGCuUGGCGCGgCGGaagUAGCG- -5'
26050 3' -56.3 NC_005342.2 + 17611 0.66 0.62126
Target:  5'- -aGACGccGGCCGCGCCcggugccgugGCCgaCAcguUCGCg -3'
miRNA:   3'- ugCUGC--UUGGCGCGG----------CGGaaGU---AGCG- -5'
26050 3' -56.3 NC_005342.2 + 7520 0.66 0.632205
Target:  5'- aGCGACuuGCCGcCGCCGgUgaCgAUCGCg -3'
miRNA:   3'- -UGCUGcuUGGC-GCGGCgGaaG-UAGCG- -5'
26050 3' -56.3 NC_005342.2 + 26868 0.66 0.632205
Target:  5'- gACGGCGu-UCGUGaaGCCgcaCGUCGCa -3'
miRNA:   3'- -UGCUGCuuGGCGCggCGGaa-GUAGCG- -5'
26050 3' -56.3 NC_005342.2 + 27389 0.66 0.632205
Target:  5'- cACGGCGcGACCcgacGCGCCGaCgaUCAgcggCGCg -3'
miRNA:   3'- -UGCUGC-UUGG----CGCGGC-GgaAGUa---GCG- -5'
26050 3' -56.3 NC_005342.2 + 22006 0.66 0.654083
Target:  5'- aGCGccGCGuACUG-GCCGCCggCAUCGa -3'
miRNA:   3'- -UGC--UGCuUGGCgCGGCGGaaGUAGCg -5'
26050 3' -56.3 NC_005342.2 + 2047 0.66 0.654083
Target:  5'- gGCG-CGAGaCGCGCCcaGCCcUCgGUCGCc -3'
miRNA:   3'- -UGCuGCUUgGCGCGG--CGGaAG-UAGCG- -5'
26050 3' -56.3 NC_005342.2 + 45072 0.66 0.654083
Target:  5'- uACGACG-GCCGCGCagcaCGUCUcugccaacaUCAgccUCGCc -3'
miRNA:   3'- -UGCUGCuUGGCGCG----GCGGA---------AGU---AGCG- -5'
26050 3' -56.3 NC_005342.2 + 44062 0.66 0.654083
Target:  5'- uCGGCcugccGCCGCuGCCGCCUgg--CGCu -3'
miRNA:   3'- uGCUGcu---UGGCG-CGGCGGAaguaGCG- -5'
26050 3' -56.3 NC_005342.2 + 29917 0.66 0.643149
Target:  5'- aGCGGCGGGCagcgcgaucagCGCuagaacucgGCCGgCUUCGUCGg -3'
miRNA:   3'- -UGCUGCUUG-----------GCG---------CGGCgGAAGUAGCg -5'
26050 3' -56.3 NC_005342.2 + 45856 0.66 0.643149
Target:  5'- aACGcCGAACUGCaGCgCGCCgaauUCGagGCg -3'
miRNA:   3'- -UGCuGCUUGGCG-CG-GCGGa---AGUagCG- -5'
26050 3' -56.3 NC_005342.2 + 41056 0.66 0.643149
Target:  5'- cUGGCGc-CCGCGCaCGCCUcaaaCGUgCGCa -3'
miRNA:   3'- uGCUGCuuGGCGCG-GCGGAa---GUA-GCG- -5'
26050 3' -56.3 NC_005342.2 + 33898 0.66 0.632205
Target:  5'- uAUGACG-AUCGCGCUgcaucagcuuuGCCUgcgcacccCAUCGCu -3'
miRNA:   3'- -UGCUGCuUGGCGCGG-----------CGGAa-------GUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.