miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26050 5' -54.3 NC_005342.2 + 17555 0.66 0.718185
Target:  5'- uUGCcGCcgccGGCGGCGGCGCgaacGGcUUCAu -3'
miRNA:   3'- cACGuUGuu--CCGCUGCCGCG----UC-AAGU- -5'
26050 5' -54.3 NC_005342.2 + 21008 0.66 0.707152
Target:  5'- -gGCAGCcgucacGGGCGACGaaguggccGCGCAGUg-- -3'
miRNA:   3'- caCGUUGu-----UCCGCUGC--------CGCGUCAagu -5'
26050 5' -54.3 NC_005342.2 + 35588 0.66 0.707152
Target:  5'- -gGCGACAcuggcgcgccGGGCGG-GGCGCGGg--- -3'
miRNA:   3'- caCGUUGU----------UCCGCUgCCGCGUCaagu -5'
26050 5' -54.3 NC_005342.2 + 29164 0.66 0.696042
Target:  5'- cUGCGGCcgcGCGAUaaGCGCGGUUCAg -3'
miRNA:   3'- cACGUUGuucCGCUGc-CGCGUCAAGU- -5'
26050 5' -54.3 NC_005342.2 + 42194 0.66 0.696042
Target:  5'- uUGCGACGGGGCGAauGCGagaGGcuaUCGa -3'
miRNA:   3'- cACGUUGUUCCGCUgcCGCg--UCa--AGU- -5'
26050 5' -54.3 NC_005342.2 + 36478 0.66 0.696042
Target:  5'- -cGCAGCGccucgugaugaAGGCGAaGGUGCAGg--- -3'
miRNA:   3'- caCGUUGU-----------UCCGCUgCCGCGUCaagu -5'
26050 5' -54.3 NC_005342.2 + 24416 0.66 0.684866
Target:  5'- -cGCGACAGcuacgcagaucGGCGGCuacccgaaaGGCGCGGUgcugCAa -3'
miRNA:   3'- caCGUUGUU-----------CCGCUG---------CCGCGUCAa---GU- -5'
26050 5' -54.3 NC_005342.2 + 4621 0.66 0.684866
Target:  5'- -cGCGAuCAuGGCGACGG-GCAGgcCGg -3'
miRNA:   3'- caCGUU-GUuCCGCUGCCgCGUCaaGU- -5'
26050 5' -54.3 NC_005342.2 + 2067 0.66 0.678135
Target:  5'- -gGCAGCGaguuguAGGCGAgcaucgccucgaauuCGGCGCgcugcAGUUCGg -3'
miRNA:   3'- caCGUUGU------UCCGCU---------------GCCGCG-----UCAAGU- -5'
26050 5' -54.3 NC_005342.2 + 21408 0.66 0.672512
Target:  5'- -cGCGGCGccggaauGGGCaaauugGGCGGCGCAGgaCGc -3'
miRNA:   3'- caCGUUGU-------UCCG------CUGCCGCGUCaaGU- -5'
26050 5' -54.3 NC_005342.2 + 25111 0.67 0.662367
Target:  5'- -gGCAcgGCGAGcaCGGCGGCGCGcacGUUCGc -3'
miRNA:   3'- caCGU--UGUUCc-GCUGCCGCGU---CAAGU- -5'
26050 5' -54.3 NC_005342.2 + 8270 0.67 0.662367
Target:  5'- aUGUAGguAGGCGGCG-CGCGGggCu -3'
miRNA:   3'- cACGUUguUCCGCUGCcGCGUCaaGu -5'
26050 5' -54.3 NC_005342.2 + 16936 0.67 0.662367
Target:  5'- cGUGCuc---GGCGuCGGCGCAGgugCGg -3'
miRNA:   3'- -CACGuuguuCCGCuGCCGCGUCaa-GU- -5'
26050 5' -54.3 NC_005342.2 + 36630 0.67 0.661238
Target:  5'- -cGCGGCAAGGUGACGacgaaccGCGCcGccUUCAu -3'
miRNA:   3'- caCGUUGUUCCGCUGC-------CGCGuC--AAGU- -5'
26050 5' -54.3 NC_005342.2 + 13360 0.67 0.651066
Target:  5'- -gGCAACAucgaAGGCaACGGCGgGGgaCAg -3'
miRNA:   3'- caCGUUGU----UCCGcUGCCGCgUCaaGU- -5'
26050 5' -54.3 NC_005342.2 + 16274 0.67 0.651066
Target:  5'- ---gAGCAGGGCGGCuucGGCGU-GUUCAa -3'
miRNA:   3'- cacgUUGUUCCGCUG---CCGCGuCAAGU- -5'
26050 5' -54.3 NC_005342.2 + 41419 0.67 0.639747
Target:  5'- -gGCAACuucGGGCGgcACGGCGCGa-UCAa -3'
miRNA:   3'- caCGUUGu--UCCGC--UGCCGCGUcaAGU- -5'
26050 5' -54.3 NC_005342.2 + 18091 0.67 0.639747
Target:  5'- cGUaCAACAcgaaAGGCGGCGGCcaaggcgcGCAGggCAu -3'
miRNA:   3'- -CAcGUUGU----UCCGCUGCCG--------CGUCaaGU- -5'
26050 5' -54.3 NC_005342.2 + 11927 0.67 0.63635
Target:  5'- aUGCGACGcccggcgacuacucGGGCGGCgcguaucgcauGGCGCAGgacUCGc -3'
miRNA:   3'- cACGUUGU--------------UCCGCUG-----------CCGCGUCa--AGU- -5'
26050 5' -54.3 NC_005342.2 + 16827 0.67 0.628421
Target:  5'- -cGCGGcCAAGGCGAUcgacgGGCGaCuGUUCGg -3'
miRNA:   3'- caCGUU-GUUCCGCUG-----CCGC-GuCAAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.