miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26050 5' -54.3 NC_005342.2 + 2595 0.77 0.176021
Target:  5'- -cGCGACAGGcCGACcGCGCGGUUCAu -3'
miRNA:   3'- caCGUUGUUCcGCUGcCGCGUCAAGU- -5'
26050 5' -54.3 NC_005342.2 + 25111 0.67 0.662367
Target:  5'- -gGCAcgGCGAGcaCGGCGGCGCGcacGUUCGc -3'
miRNA:   3'- caCGU--UGUUCc-GCUGCCGCGU---CAAGU- -5'
26050 5' -54.3 NC_005342.2 + 21408 0.66 0.672512
Target:  5'- -cGCGGCGccggaauGGGCaaauugGGCGGCGCAGgaCGc -3'
miRNA:   3'- caCGUUGU-------UCCG------CUGCCGCGUCaaGU- -5'
26050 5' -54.3 NC_005342.2 + 21008 0.66 0.707152
Target:  5'- -gGCAGCcgucacGGGCGACGaaguggccGCGCAGUg-- -3'
miRNA:   3'- caCGUUGu-----UCCGCUGC--------CGCGUCAagu -5'
26050 5' -54.3 NC_005342.2 + 18586 0.72 0.366876
Target:  5'- cGUGCAACAaacgaccGGcGCGGCaGGCGCGGgcggCAa -3'
miRNA:   3'- -CACGUUGU-------UC-CGCUG-CCGCGUCaa--GU- -5'
26050 5' -54.3 NC_005342.2 + 10608 0.71 0.385914
Target:  5'- aUGCAAuCAAGGUGGCGGCGaagaaaGGUgacgUCAc -3'
miRNA:   3'- cACGUU-GUUCCGCUGCCGCg-----UCA----AGU- -5'
26050 5' -54.3 NC_005342.2 + 11310 0.7 0.433782
Target:  5'- -cGCGAUGAa--GGCGGCGCGGUUCGu -3'
miRNA:   3'- caCGUUGUUccgCUGCCGCGUCAAGU- -5'
26050 5' -54.3 NC_005342.2 + 15238 0.7 0.443763
Target:  5'- -aGCGACGAuuugccgugcuGCGGCGGCGCGG-UCAg -3'
miRNA:   3'- caCGUUGUUc----------CGCUGCCGCGUCaAGU- -5'
26050 5' -54.3 NC_005342.2 + 39028 0.68 0.549794
Target:  5'- -gGCAGCcgauucgcucGGCGGCGGCGCGcUUCu -3'
miRNA:   3'- caCGUUGuu--------CCGCUGCCGCGUcAAGu -5'
26050 5' -54.3 NC_005342.2 + 41419 0.67 0.639747
Target:  5'- -gGCAACuucGGGCGgcACGGCGCGa-UCAa -3'
miRNA:   3'- caCGUUGu--UCCGC--UGCCGCGUcaAGU- -5'
26050 5' -54.3 NC_005342.2 + 20949 0.68 0.582131
Target:  5'- -cGCcACGGGGCGgacgcaaacgcgcGCGGCGCGGg--- -3'
miRNA:   3'- caCGuUGUUCCGC-------------UGCCGCGUCaagu -5'
26050 5' -54.3 NC_005342.2 + 31970 0.69 0.537669
Target:  5'- -gGCAGCAGcGGCcgaaagccuuccgGAUGGCGCGGgUCGg -3'
miRNA:   3'- caCGUUGUU-CCG-------------CUGCCGCGUCaAGU- -5'
26050 5' -54.3 NC_005342.2 + 6972 0.74 0.257657
Target:  5'- aGUGCuGCGAGuuGGCGGUGCAGaUUCAu -3'
miRNA:   3'- -CACGuUGUUCcgCUGCCGCGUC-AAGU- -5'
26050 5' -54.3 NC_005342.2 + 3279 0.67 0.617098
Target:  5'- uGUGC-GCGcGGCGGCG-CGCGGUUgAa -3'
miRNA:   3'- -CACGuUGUuCCGCUGCcGCGUCAAgU- -5'
26050 5' -54.3 NC_005342.2 + 13787 0.73 0.293569
Target:  5'- -gGCGcGCGAGGCgcagcGACGGCGaCGGUUCGg -3'
miRNA:   3'- caCGU-UGUUCCG-----CUGCCGC-GUCAAGU- -5'
26050 5' -54.3 NC_005342.2 + 24877 0.7 0.453871
Target:  5'- uUGCgGAUAGGGCGGCGG-GUAGUUg- -3'
miRNA:   3'- cACG-UUGUUCCGCUGCCgCGUCAAgu -5'
26050 5' -54.3 NC_005342.2 + 16827 0.67 0.628421
Target:  5'- -cGCGGcCAAGGCGAUcgacgGGCGaCuGUUCGg -3'
miRNA:   3'- caCGUU-GUUCCGCUG-----CCGC-GuCAAGU- -5'
26050 5' -54.3 NC_005342.2 + 8270 0.67 0.662367
Target:  5'- aUGUAGguAGGCGGCG-CGCGGggCu -3'
miRNA:   3'- cACGUUguUCCGCUGCcGCGUCaaGu -5'
26050 5' -54.3 NC_005342.2 + 31792 0.72 0.358917
Target:  5'- -cGCGACGAucgcauagaucGGCGuCGGCGC-GUUCAg -3'
miRNA:   3'- caCGUUGUU-----------CCGCuGCCGCGuCAAGU- -5'
26050 5' -54.3 NC_005342.2 + 30343 0.71 0.414218
Target:  5'- cGUGCAGCAGcGCGGCaaGGCGCGGc--- -3'
miRNA:   3'- -CACGUUGUUcCGCUG--CCGCGUCaagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.